Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0038
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88178-4|AAC24411.1|  460|Caenorhabditis elegans Hypothetical pr...    30   0.55 
Z82256-1|CAB05113.1|  627|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81492-7|CAB04032.1|  384|Caenorhabditis elegans Hypothetical pr...    26   9.0  
AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    26   9.0  

>U88178-4|AAC24411.1|  460|Caenorhabditis elegans Hypothetical
           protein W09C3.2 protein.
          Length = 460

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 243 PPNCLRGSTKPSPQLTTLTPKVRAFVERRL--LCASRSTCTCATAPRQXR 386
           PPN ++ S+KP+P  +  T K +   ++R   L A +S+ T    P++ +
Sbjct: 408 PPNMMKTSSKPNPSPSKKTQKAKEKAKKRSKNLGAKKSSSTVKAEPKRSK 457


>Z82256-1|CAB05113.1|  627|Caenorhabditis elegans Hypothetical
           protein B0513.1 protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 213 SSGDWMXPRRPPNCLRGSTKPSPQLTTLTP 302
           +SGD   P   P+    +T  +P+LT+LTP
Sbjct: 439 NSGDQWSPLFSPSTWSNNTNANPRLTSLTP 468


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
 Frame = +3

Query: 156 HAAF*GHPRRLRE-----EDGTMCSSGDWMXPRRPPNCLRGSTKPSPQLTTLTPKVRAFV 320
           H AF G P +  +     +D   C        R PP+    + +P P+ +T  P  RA  
Sbjct: 251 HDAFPGTPGQAGKPGAPGKDANYCPCPQRQDDRTPPSSGTSAPQPPPRGSTAAPGTRAPP 310

Query: 321 ERRLLCASRSTCTCATAP 374
             R   A+R+      AP
Sbjct: 311 ATRAPPATRAPPATTRAP 328


>Z81492-7|CAB04032.1|  384|Caenorhabditis elegans Hypothetical
           protein E03H4.11 protein.
          Length = 384

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 369 PSHTCTCSGWHRAACAPRTRE 307
           P   CT SGW + + AP T++
Sbjct: 64  PKENCTRSGWLKDSTAPETQD 84


>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 243 PPNCLRGSTKPSPQLTTLTPKVRAFVERRLLCAS 344
           PP  ++   +  PQL  L  K+  F E RL C S
Sbjct: 295 PPPPIQQKNRSKPQLLQLPGKIDNFEEFRLQCLS 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,033,077
Number of Sequences: 27780
Number of extensions: 133379
Number of successful extensions: 457
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)