Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0035
         (565 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   1.0  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   7.3  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   7.3  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 449 RWVNHQLQSAGVTRRCANFQTTWPTPRSTP 538
           R+  H +Q    TR       T  TPR+TP
Sbjct: 268 RFTRHLIQRRTHTRHTTTSHNTRGTPRTTP 297


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 258 MYTRWPARRPAPESSSRVS 202
           M  RW AR    ESSS V+
Sbjct: 1   MKRRWSARVAPEESSSEVT 19


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 238 EETSARVKFSCFVYN-VRFFLLIARSSIVSGH 146
           EET A +  S FVY  V   L+I    +V+ +
Sbjct: 207 EETFAIIHLSVFVYTLVSVILIIMGCDVVASN 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,227
Number of Sequences: 336
Number of extensions: 2667
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)