Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0035
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    83   4e-17
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    28   0.82 
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    28   0.82 
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    28   1.1  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    27   1.9  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    27   2.5  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   7.7  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.7  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.7  

>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 82.6 bits (195), Expect = 4e-17
 Identities = 39/85 (45%), Positives = 54/85 (63%)
 Frame = +2

Query: 251 VYIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFNQITLEHCPGLTELLNDQERIEDLLALS 430
           + I NI A D+ +G+ HL+LGL+WQIIR GL  +I +   P L  LL + E ++  L L 
Sbjct: 203 ISITNIGAGDILEGREHLILGLVWQIIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLP 262

Query: 431 PEAILLRWVNHQLQSAGVTRRCANF 505
           PE ILLRW N+ L++A   R  +NF
Sbjct: 263 PEKILLRWFNYHLKAANWPRTVSNF 287



 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
 Frame = +3

Query: 90  QLYEKLKDGLILCKVINHPCPDTIDERAINK----KNLTLYTKHENLTLALVSSQAIG 251
           + +++ KDGLIL K+IN   PDTIDER +NK    K L  +   EN  + + S++A+G
Sbjct: 144 EFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201



 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 96  YEKLKDGLILCKVINHPCPDTIDERAINK 182
           +  L+DGLIL +  +   P+T++ + +NK
Sbjct: 408 FNNLRDGLILLQAYDKITPNTVNWKKVNK 436



 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 1   EQMAFSGWINSNLEHDPDLKHLLPIDPEASSSTKNSKTDLFYAK 132
           E+  F   INS L  DPD+   +PI+ E        K  L  +K
Sbjct: 114 ERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSK 157


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 197 IHETRELDSGAGLLAGHRVYIVNIDAHDLAKGKPHLVLGLLWQII 331
           +H    ++     +    + + NI   D+  G   L+LGL+W +I
Sbjct: 66  VHRLENVNKALEYIKSKGMPLTNIGPADIVDGNLKLILGLIWTLI 110



 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 111 DGLILCKVINHPCPDTIDERAINKKN 188
           +GL  C +I+   PD +D   ++KKN
Sbjct: 155 NGLAFCALIHQHRPDLLDYNKLDKKN 180


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 314  LLWQIIRIGLFNQITLEHCPGLTELLNDQERIE 412
            LL ++I  G+FN +T E C  L   L  QE+ E
Sbjct: 961  LLTELIFNGMFNDLTPEQCAALLSCLVFQEKSE 993


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 80  PKQAALRKTQRRTYSMQSNKSPVPGHDRRASDQQEEPDVIHETRELDSGAGLLAGHRV 253
           P+  ALR   R TY ++  +S   G     S ++E+ +++   +    G  LLA +++
Sbjct: 288 PRTQALRPGARLTYKLREARSSKRGESTPQSFREEDNNLMELLKLFGKGVYLLAQYKL 345


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -1

Query: 442 DGLRGQSQQILDAFLVIQQFRESGAVLQRYLVEETNSDDLPQETEHQMRFAFSKIVSVDV 263
           DG+     +++  FLV +Q  +  +V  R    ++ SD   +E       AF+  V VDV
Sbjct: 69  DGIAWSPSRVIGNFLVYRQLCKKNSVSDRKRSSKSRSDSDEEEVS-----AFTVSVPVDV 123

Query: 262 D 260
           D
Sbjct: 124 D 124


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -1

Query: 466 LVVDPAQQDGLRGQSQQIL--DAFLVIQQFRESGAVLQRYLVEETNSD 329
           + +DP +QD L  +  QIL  D+ L+  +  ++ + ++ Y+ E T  +
Sbjct: 124 ITIDPQEQDDLEREEMQILPTDSLLLAARTEDNLSHVEVYVYEPTEEN 171


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 388 QFRESGAVLQRYLVEETNSD-DLPQETE 308
           QF+   A++ R  +EETNSD D  +ET+
Sbjct: 690 QFKNKLALIDRKQMEETNSDEDGSKETD 717


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 457 DPAQQDGLRGQSQQILDAFLVIQQ 386
           D AQQDGLRG    +L    +IQ+
Sbjct: 406 DTAQQDGLRGIQIAMLPFVFMIQE 429


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 247 MACEETSARVKFSCFVYNVRFFLLIARSSIV 155
           M CE  +AR   SC +   +FF +I  +S V
Sbjct: 103 MLCEILNARNVISCSLNTQKFFFIIVAASNV 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,740
Number of Sequences: 5004
Number of extensions: 42459
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)