Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0035
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.23 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = -1

Query: 331 DDLPQETEHQMRFAFSKIVSVDVDDVHPMACEETS-ARVKFSCFVYNVRFFLLIARSSI 158
           ++   E E   + AF  IVS     VHP    + S  R    C VY V   +   R S+
Sbjct: 344 EEWENENESDYQDAFCNIVSCSPQTVHPETIIDVSRRRSSLICDVYGVNESVSYERGSM 402


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 442  PAALGQPPAAVRRRHAALRQLPDDVADSE 528
            PAA      + RRR    +Q P DV   E
Sbjct: 1756 PAATSMKSVSSRRRQQRKQQTPGDVESDE 1784


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 442  PAALGQPPAAVRRRHAALRQLPDDVADSE 528
            PAA      + RRR    +Q P DV   E
Sbjct: 1752 PAATSMKSVSSRRRQQRKQQTPGDVESDE 1780


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 119 KSVFEFFVELLASGSIGK 66
           K++FEF  + + SGS GK
Sbjct: 329 KNLFEFIRKQVLSGSTGK 346


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +3

Query: 321 GRSSELVSSTR*RWSTAPDSRNC*MTRNASRICWLCPRRPSCCAGSTTSCSPPASR 488
           G S+   +S   R S +  SRN     N S     C RRPS    S  +   P S+
Sbjct: 16  GYSNTCSNSQSQRSSGSSISRNS----NRSESSGYCGRRPSTFGSSNEALPQPISK 67


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +3

Query: 321 GRSSELVSSTR*RWSTAPDSRNC*MTRNASRICWLCPRRPSCCAGSTTSCSPPASR 488
           G S+   +S   R S +  SRN     N S     C RRPS    S  +   P S+
Sbjct: 16  GYSNTCSNSQSQRSSGSSISRNS----NRSESSGYCGRRPSTFGSSNEALPQPISK 67


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = -2

Query: 90   ACFGIDRQEMFEVWIVF 40
            ACF  DR+ +++ ++ +
Sbjct: 1056 ACFDSDRERLYDCYVCY 1072


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 44  TIQTSNISCRSIPKQAALRKTQRRTYSMQSNKSPVPG 154
           T  TSN S   IP+ + +  T  ++  ++ +++P  G
Sbjct: 728 TNNTSNNSQLQIPRASLVSTTSVKSLRLEGDETPPYG 764


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,236
Number of Sequences: 438
Number of extensions: 3049
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)