Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0034
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   1.9  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   3.3  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   4.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.8  
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    26   5.8  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   7.7  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   7.7  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   7.7  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 205  LTLIADDLLFDVRVAYFSFVFDRRSGRSTFLFIRDQY 95
            + ++  DL+ +V    FSFV+D    R+TF  + D+Y
Sbjct: 983  IAVVLSDLILNVEPTGFSFVYD--FIRATFTSLNDEY 1017


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 298 FDFKTDVRGNLIPKPASLVASVTYANSVSVLDDKYRFKGNYGDDISFELA---GVREIKL 468
           F+ K     N+    AS    V  ++    L D YR KGNYG D +  L+   GV   ++
Sbjct: 14  FEEKGSTSSNISDNCASRDYDVNISSDNPRLLDSYRPKGNYGRDRNSPLSRHIGVPNQEI 73

Query: 469 IEKG 480
           I +G
Sbjct: 74  ILQG 77


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 301 DFKTDVRGNLIPKPASLVASVTYANSVSVLDDKYRFKGNYGDDISFELAG 450
           +F   +  + I    S+V+S    N+ +V+D    F  NY +D S  L G
Sbjct: 747 EFSRSMDCDSIKNALSVVSSTRPKNTTAVIDVDSSFCRNYSEDASTSLHG 796


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 242 DLKNNSPLGTSPMETSYTISTSRLTSEAT 328
           +LKN S   +SP+E S T+S    T   T
Sbjct: 76  ELKNRSHFSSSPVEESSTVSPETTTGSFT 104


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 530 FEWQYYSYMKLSLNFFSP 477
           F +QY+ YMK S++ + P
Sbjct: 455 FPYQYFPYMKFSVSLYEP 472


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 140 IKYEAKIRDTNIEKQIISYEGQLEFQFKNKGQSKDLKNNSPLGTSPMETSYTI 298
           ++Y  K+ DT  E++ +     LE Q     Q +D  NNS      ME  YT+
Sbjct: 171 LEYYEKVADTFAERRSL-----LEMQEPLTEQQQDFLNNSTCVDKVMENRYTM 218


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 137 TIKYEAKIRDTNIEKQIISYEGQLEFQFKNKGQSKDLKN 253
           T+ YE    D  +++ I+S+E   E + + K  S D+ N
Sbjct: 238 TLLYETDKFDETMKEAILSFEDLKEQEIRRKVSSDDVHN 276


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 637 RSALICTDSTSVYSAKSLPSGW 572
           RS+L   ++ +VYS K +PS W
Sbjct: 341 RSSLPSAENWNVYSKKDIPSRW 362


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 605 RVLSKIFAFRLEEEYRRNPFNIVSFFEWQYYSYMK-LSLNFFSPFSISLISRTPASSNEI 429
           RVL K+ +F  ++       N+ +FF W   S++  + +   + FS+ L +    S+ E+
Sbjct: 111 RVLKKMKSFLFKQNKPLTVDNVTAFFSWWLVSHIVWIVVGTTTFFSLLLYTLNTVSAQEL 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,068
Number of Sequences: 5004
Number of extensions: 56550
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)