Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0034
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0243 - 1837830-1837886,1837969-1838016,1838113-1838255,183... 29 2.6
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 29 3.4
06_01_0230 + 1765913-1766251,1766365-1766445,1766553-1766651,176... 29 3.4
05_03_0303 + 11988897-11989223 29 4.5
12_02_0705 + 22317657-22318529 28 7.9
12_02_0674 - 21745321-21746223,21746229-21747608 28 7.9
12_01_0405 - 3207977-3208018,3208097-3208215,3208303-3208429,320... 28 7.9
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961... 28 7.9
07_03_0750 - 21226896-21227011,21227116-21227370,21227469-212287... 28 7.9
>06_01_0243 -
1837830-1837886,1837969-1838016,1838113-1838255,
1838784-1838982,1839085-1839265,1839857-1840228,
1841453-1841658
Length = 401
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 379 VSVLDDKYRFKGNYGDDISFELAGVREIKLIEKGEKKFN 495
V VL DKY + +D+++EL V +LI +G K FN
Sbjct: 238 VQVLLDKYNDDHDLVEDLAYELQDVVHYQLIVEGIKWFN 276
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 131 ASTIKYEAKIRDTNIEKQIISYEGQLEFQFKNKGQSKDLKNNSPLGTSPMETSYT-ISTS 307
A K EA + D N Q+I YE QLE ++K + KDL ++ E T +
Sbjct: 1067 ADKAKLEANLEDVNA--QMIHYESQLEDLRESKTKIKDLVDSLNASKQNEEMLTTDVDNM 1124
Query: 308 RLTSEAT*SRSQRL 349
R + EA S L
Sbjct: 1125 RRSIEAARSNEDNL 1138
>06_01_0230 +
1765913-1766251,1766365-1766445,1766553-1766651,
1766748-1766837,1766937-1767000,1767093-1767193,
1767284-1767393,1767515-1767758,1767852-1768052,
1768296-1768487,1768594-1768680,1768790-1768918,
1769276-1769392
Length = 617
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 280 GDKLYNFDFKTDVRGNLIPKPASLVASVTYANSVSVLDDKYRFKGNYGDDISF 438
G+K+Y D D + N + + + L + A + L++ FKG YG+D+ F
Sbjct: 179 GEKIYGPDTGVDYKDNQM-RFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVF 230
>05_03_0303 + 11988897-11989223
Length = 108
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 74 LYNGFAKVLISDEEKRGAAASTIKYEAKIRDTN--IEKQI 187
L N F +++S ++ GAAA + +RDTN IEK +
Sbjct: 65 LQNFFNGLILSSQDHLGAAAGGALFSKTVRDTNGLIEKMV 104
>12_02_0705 + 22317657-22318529
Length = 290
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 122 GAAASTIKYEAKIRDTNIEKQIISYEGQLEFQFKNKGQSKDLKNNSPLGTSPME 283
GA S+ E + +N E+ EGQ + + + KG+ K +SPLG P +
Sbjct: 180 GAYTSSSNQETEEESSNKERHP---EGQKKAKERLKGKGKGKAQSSPLGNQPSQ 230
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 230 GQSKDLKNNSPLGTSPMETSYTISTSRLTS 319
G++ + SPL TS +TS T STS L+S
Sbjct: 586 GKTSSTPSTSPLSTSTSKTSSTPSTSPLSS 615
>12_01_0405 -
3207977-3208018,3208097-3208215,3208303-3208429,
3208776-3208914,3209001-3209227,3209389-3209522,
3209659-3209779
Length = 302
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 LPNERCLSYEVNRNIAVNNA-GLYNGFAKVLISDEEKRGAAASTIKYEAKIRDTNIEKQI 187
LP ++ LS R I +N +Y +A + + R AA S I + ++ ++
Sbjct: 149 LPAKQGLSVHQLREILLNEQESMYERYAALFALRNDSRDAAVSAIVAALGAKSALLKHEV 208
Query: 188 ISYEGQLEFQFKNKGQSKDLKN 253
GQL+ + + S LKN
Sbjct: 209 AYVLGQLQNKAASDALSTVLKN 230
>09_02_0469 -
9610883-9611338,9611749-9611871,9612199-9612375,
9614416-9614501,9615519-9615678,9616122-9617438,
9619463-9620428,9621452-9621766
Length = 1199
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 155 KIRDTNIEKQIISYEGQLEFQFKNKGQSKDLKNNSPLGTSPMETSYTISTSRLT 316
++R N E I+YE E + SKDL + S L +E ++ S T
Sbjct: 817 QVRSRNSEISEITYEEPAEIELLRNNPSKDLASISHLNEDRIEEPEVVTESSAT 870
>07_03_0750 -
21226896-21227011,21227116-21227370,21227469-21228785,
21228918-21228984
Length = 584
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 271 FPDGDKLYNFDFKTDVRGNLIPKPAS 348
+PDG ++Y DF GN+ P AS
Sbjct: 358 YPDGTEVYQVDFHNGGGGNVCPTKAS 383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,100,839
Number of Sequences: 37544
Number of extensions: 335967
Number of successful extensions: 843
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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