Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0034
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17507| Best HMM Match : SIR2 (HMM E-Value=0.00019)                  31   1.1  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  29   3.5  
SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)                   29   4.6  
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                28   8.1  
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_17507| Best HMM Match : SIR2 (HMM E-Value=0.00019)
          Length = 202

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 29  LSYEVNRNIAVNNAGLYNGFAKVLISDEEKRGAAASTIKYEAKIRDTNIEKQIISYEGQL 208
           LS  +++N A N  G+ NG      +D+E +G A     +E   ++T+ +   I    +L
Sbjct: 24  LSSPLDKNDATNTIGVVNGDGSK--ADDESKGGATGGADWEVDDKETSFQASQIEAMMKL 81

Query: 209 EFQFK-NKGQSKDLK 250
             QF+ N  Q K  K
Sbjct: 82  FNQFRLNLTQEKSEK 96


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +3

Query: 501  FHITVILPFEKAH--DIKWVSTIFFLQPEGKDFAEYTLVESVQINADLYKIDV 653
            F++T+ +  EK H  D+K    +F L+  G+  ++  L   V+ +A+LYK ++
Sbjct: 2820 FYVTMGVFTEKDHNGDLKVTDAVFGLEMHGQLISKVDLHLGVEASANLYKSEI 2872


>SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)
          Length = 1048

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 24/81 (29%), Positives = 35/81 (43%)
 Frame = +2

Query: 77  YNGFAKVLISDEEKRGAAASTIKYEAKIRDTNIEKQIISYEGQLEFQFKNKGQSKDLKNN 256
           Y  F  + ++ E  RG  A  ++    +R+ N E+  I    Q      N   S D    
Sbjct: 711 YLSFRVIKVNRECVRGLWAGQLQELIFLRNRNPERGSIQNAKQALRNIINS--SCDQPIG 768

Query: 257 SPLGTSPMETSYTISTSRLTS 319
            P+  SP+ TSY  S  +LTS
Sbjct: 769 YPIYVSPLSTSYADSNPQLTS 789


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 280  GDKLYNFDFKTDVRGNLIPKPASLVASVTYANSVSVL--DDKYRFKGNYGDD 429
            G KL+ FD + D + +L  +   L+  +     V ++  DD    KGN  DD
Sbjct: 2125 GTKLFKFDMRVDEKLSLFDRVNELMKRIPIVIVVVIIAVDDDCDGKGNVSDD 2176


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/36 (36%), Positives = 26/36 (72%)
 Frame = +3

Query: 123 ERPLLRSNTKLKYATRTSKSKSSAMRVNWNSNLRIK 230
           E PLL     L++ T+ +KSK SA+++ ++++LR++
Sbjct: 173 ESPLLFEVEVLRHTTKVAKSK-SALQLRYDTSLRLR 207


>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 451 HQRARTRYHHHSYP*TCIYHRERSL 377
           H   R RYHHH  P    YHR R++
Sbjct: 242 HNHRRLRYHHHR-PIFYHYHRRRNI 265


>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 248 KNNSPLGTSPMETSYTISTSRLTSEAT*SRSQRLWWQA 361
           K ++ +G +   T + I+ SRL ++A   R Q + WQ+
Sbjct: 16  KQDTEMGETSATTGFVIAGSRLVADAVEVRKQTVNWQS 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,843,081
Number of Sequences: 59808
Number of extensions: 405675
Number of successful extensions: 944
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)