Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0034
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U61288-1|AAB17543.1|  790|Caenorhabditis elegans CE protein.           29   3.1  
AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    29   4.1  
U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical
           protein F28C10.4 protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 531 FRMAILQLYEIIIEFLLALFNKFDLPYTSELERDII 424
           F++   + +  II+FL   FNK    YTSE+ R II
Sbjct: 18  FKIKNARFFGTIIKFLCIYFNKLGNDYTSEIARLII 53


>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
            R08B4.1b protein.
          Length = 1160

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 531  FRMAILQLYEIIIEFLLALFN-KFDLPYTSELERDIITIV 415
            F  A  +L  +++EF   L+N K +LP  + L RDII+++
Sbjct: 1116 FFWAYDKLRSVLVEFFGDLYNNKIELPTGTTLSRDIISLI 1155


>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical protein
            R08B4.1a protein.
          Length = 1137

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 531  FRMAILQLYEIIIEFLLALFN-KFDLPYTSELERDIITIV 415
            F  A  +L  +++EF   L+N K +LP  + L RDII+++
Sbjct: 1093 FFWAYDKLRSVLVEFFGDLYNNKIELPTGTTLSRDIISLI 1132


>U61288-1|AAB17543.1|  790|Caenorhabditis elegans CE protein.
          Length = 790

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 531 FRMAILQLYEIIIEFLLALFN-KFDLPYTSELERDIITIV 415
           F  A  +L  +++EF   L+N K +LP  + L RDII+++
Sbjct: 746 FFWAYDKLRSVLVEFFGDLYNNKIELPTGTTLSRDIISLI 785


>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 601 YSAKSLPSGWRKNIVETHL 545
           Y ++ +PSGW K ++E H+
Sbjct: 44  YRSRQVPSGWAKTVLENHI 62


>U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical
           protein D1014.6 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 674 LKTFLAIHVDFV*ICINLHRFYQRVLSKIFAFRLEEEYRRNPFNIVSFFEW 522
           + T+  +    V   I + R Y+ V  ++FA  LE      PFNI    +W
Sbjct: 400 MTTYSGLRRSLVNETIGVVRHYRNVEQRVFAGALERMMVHAPFNIYPIPKW 450


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
           protein T13H2.5a protein.
          Length = 2471

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 274 PDGDKLYNFDFKTDV 318
           P+ DKLYNFDF  D+
Sbjct: 507 PEKDKLYNFDFMIDM 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,943,541
Number of Sequences: 27780
Number of extensions: 307502
Number of successful extensions: 858
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)