Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0034
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17580.1 68418.m02062 phototropic-responsive NPH3 family prot...    29   3.8  
At3g15250.1 68416.m01926 expressed protein ; expression supporte...    28   5.0  
At2g42480.1 68415.m05255 meprin and TRAF homology domain-contain...    28   5.0  
At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containi...    28   6.6  
At4g01420.1 68417.m00182 calcineurin B-like protein 5 (CBL5) ide...    27   8.8  

>At5g17580.1 68418.m02062 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 548

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 605 RVLSKIFAFRLE-EEYRRNPFNIVSFFEWQYYSYMKLSLNFFSPFSISLI 459
           R+L ++   R E ++YR NP   +   +W+    + + L  + PF I  I
Sbjct: 153 RLLGELIKNRAETDDYRPNPRRRLFVIDWKSEDLITIPLRLYEPFMIRAI 202


>At3g15250.1 68416.m01926 expressed protein ; expression supported
           by MPSS
          Length = 217

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +2

Query: 116 KRGAAASTIKYEAKIRDTNIEKQIISYEGQLEFQFKNKGQSKDLKNNSPLGTSPMETSYT 295
           KR  +++T +Y ++   TN      S       Q      S   KNNSP+   P++    
Sbjct: 61  KRSISSTTSEYTSRCNSTNSSSSFGSNNSSTS-QSPRTSYSTSNKNNSPINQEPLDLKLK 119

Query: 296 ISTSR 310
              SR
Sbjct: 120 PPISR 124


>At2g42480.1 68415.m05255 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 743

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +3

Query: 210 NSNLRIKVKVKTLKIIHP*ELPRWRQVIQFR-LQD 311
           N  L I V+VK ++++HP EL   +++++F+ LQD
Sbjct: 503 NDKLIITVEVKVVEVVHPGEL-TGKEMVEFKELQD 536


>At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containing
           protein vacontains Pfam profile PF01535: PPR repeat
          Length = 621

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 602 VLSKIFAFRLEEEYRRNPFNIVSFFEW 522
           VLS  F  R+ +E R +P   ++FF W
Sbjct: 223 VLSDNFVIRVLKELREHPLKALAFFHW 249


>At4g01420.1 68417.m00182 calcineurin B-like protein 5 (CBL5)
           identical to calcineurin B-like protein 5 (GI:9965366)
           [Arabidopsis thaliana]; similar to N. crassa calcineurin
           calcium-regulated protein phosphatase, GenBank accession
           number P87072
          Length = 203

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 237 VKTLKIIHP*ELPRWRQVIQFRLQD*RPRQ-LDPE 338
           V TL I HP   PR + +  FRL D R    ++PE
Sbjct: 92  VHTLNIFHPNSSPRDKAIFAFRLYDTRETGFIEPE 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,081,721
Number of Sequences: 28952
Number of extensions: 286278
Number of successful extensions: 818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)