Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0033
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   2.6  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    27   2.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   2.6  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    26   5.9  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   7.9  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    25   7.9  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 632 NRYVLNYVFTNFEFCYRTLKIITKLS 555
           N+  L  VF+N E CY + K I +LS
Sbjct: 652 NKPSLEDVFSNLETCYESAKAIVQLS 677


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 425 IATEKSPKSFTQIKTIINLQYFFYRL 502
           ++ EK PKSF  +  I    +FFY +
Sbjct: 378 VSEEKGPKSFANLAFITIFSHFFYHI 403


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = -3

Query: 295  DNTNKSVSSLLRLAHKVS-RARRLFNRERKLTNFLIKLSELTK 170
            D +NK VSSL +  +++S +A ++   ERK+TN + + S+L K
Sbjct: 1228 DLSNK-VSSLTKQVNELSPKASKVPELERKITNLMHEYSQLGK 1269


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 626 YVLNYVFTNFEFCYRTLKIITKLSQVI*FKFTKTSHINVSFLSGK 492
           Y+L+   T+  F    L+ + K+  V  +   K+ ++NV+F S K
Sbjct: 4   YLLHLASTHAHFHLPELETLAKIENVEFWLIPKSEYLNVAFKSDK 48


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
 Frame = -3

Query: 301 IIDNTNKSVSSLLRLAHKVSRARRL-FNR---ERKLTNFLIKLSELTKILRLIFTVTIIQ 134
           ++  T K +  + + A  +SR+ R  F R   E  + N L   +  + +L+ ++  +   
Sbjct: 241 VLPFTIKLLKKISQRAQDLSRSHRNEFLRILTEFNIPNKLDNSASFSDLLKFVYKTSKPS 300

Query: 133 PRRK----SFLK*VTK-YLYSEHVLTEVLQIYF 50
           P  K     FL   +K +L S+H+ +E+ ++YF
Sbjct: 301 PYAKISLLHFLLTESKHFLISDHIFSEIQKVYF 333


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 662 PQLHSSCDVINRYVLNYVFTNFEFCY 585
           P LH+   ++    L++VF  + FC+
Sbjct: 252 PSLHAGWAMLEALFLSHVFPRYRFCF 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,537
Number of Sequences: 5004
Number of extensions: 38860
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)