Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0031
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.5  
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    27   3.4  

>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 121 RATSPVVPLSPTRTISSVFANGADTSAAIFGSASRTRAI 5
           R T  V+P  P   ++S+ ANG+  S+ I  +A + +++
Sbjct: 57  RVTFAVLPTKPKDEVTSMKANGSRQSSCIVSNARKRQSV 95


>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 45  EVSAPLAKTDEIVLVGDNGTTGDVARL--ASGIPPALKTLTG 164
           E+S    K D I+ VG +GT    A L   SG+PP L    G
Sbjct: 117 EISDLEQKVDAIITVGGDGTILHAASLFARSGMPPILSFSLG 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,517
Number of Sequences: 5004
Number of extensions: 51376
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)