Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0031
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0147 - 13125065-13126679,13126802-13127664                       30   2.0  
12_01_0860 - 8082481-8082792,8083748-8083816                           29   2.6  
03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978...    29   2.6  
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293     29   3.5  
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797...    28   6.0  
12_01_0793 + 7275784-7276024,7276119-7276288                           28   8.0  
02_04_0024 + 19004383-19004586                                         28   8.0  

>01_03_0147 - 13125065-13126679,13126802-13127664
          Length = 825

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/49 (42%), Positives = 28/49 (57%)
 Frame = +3

Query: 48  VSAPLAKTDEIVLVGDNGTTGDVARLASGIPPALKTLTGLDLTQVLKRL 194
           + AP+ K  E+V+  D+GTTG      SG+P A KT      T VL+RL
Sbjct: 188 LDAPVKKVSEMVV--DDGTTGLKVVSISGMPGAGKTTLA---TAVLRRL 231


>12_01_0860 - 8082481-8082792,8083748-8083816
          Length = 126

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -3

Query: 214 SSPPVGCKRFSTCVRSKPVRVFRAGGIPLA---RRATSPVVPLSPTRTISSVFANGADTS 44
           S  P  C R ++C R  P+     G +P+    RR     +P+ P++T SS F     TS
Sbjct: 34  SDYPYPCPRGNSCPRVYPLLYDEQGTLPMPVAHRRHVPTGMPVYPSQTHSSTFQPQISTS 93


>03_02_0603 -
           9786761-9786856,9787189-9787269,9787366-9787431,
           9788056-9788610,9788693-9788857,9789110-9789217,
           9789905-9790109,9790347-9790434,9791590-9792109
          Length = 627

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 117 PRLRWFR--CLLPGLSRPSSLMEPTLLPRSLAAL 22
           PR RW R   L PG+S P S   P+  P++ AAL
Sbjct: 17  PRRRWRRRPLLRPGVSSPPSRCRPSPSPKAKAAL 50


>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
          Length = 352

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 66  KTDEIVLVGDNGTTGDVARLASGIPPALKTLTGLDLTQVLKRLHPTGGEETN 221
           +T+     G   TTG    + +G PPA   L G+  T V  +     GE+TN
Sbjct: 92  RTNRATNAGYWKTTGKDKEIFTGQPPATPELVGMKKTLVFYKGRAPRGEKTN 143


>05_06_0020 +
           24976990-24977167,24978763-24978874,24979634-24979722,
           24979801-24979869,24979953-24980082,24980506-24980664,
           24980767-24981127,24981343-24981452,24981753-24981909,
           24983336-24983748,24983828-24984020,24984384-24986198
          Length = 1261

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +3

Query: 18  LEALPKIAAEVSAPLAKTDEIVLVGDNGTTGDVARLASGIPPALKTLTGLDLTQVLKRLH 197
           +EA    ++  S+PL +T ++V   +    G     A+G P   + +T     + +  + 
Sbjct: 673 MEAKTSGSSPSSSPLDETPDVVKSPEQSAEGTTDAKANGTPNKDEPVTNCVAEESVSVMP 732

Query: 198 PTGGEE--TNLAAAATKKKEV*LSKHISAPT 284
            T   E  + +A A TK + V    H+  PT
Sbjct: 733 GTKSTEALSGMALAKTKVEPVSNKDHVPKPT 763


>12_01_0793 + 7275784-7276024,7276119-7276288
          Length = 136

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 36  IAAEVSAPLAKTDEIVLVGDNGTTGDVARLASGIPPAL 149
           + A  +A +A    +VL GD G  G+V  +  G P  L
Sbjct: 56  LGALSNAEMATRARVVLAGDGGRAGEVGDVGGGYPVRL 93


>02_04_0024 + 19004383-19004586
          Length = 67

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 153 TLTGLDLTQVLKRLHPTGGEETNLAAAATKKKE 251
           T+T  DL    ++  P G EE    AAA KK+E
Sbjct: 5   TVTAADLAPWSQQCRPVGEEEEGGVAAAAKKEE 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,548,003
Number of Sequences: 37544
Number of extensions: 331836
Number of successful extensions: 859
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)