Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0031
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)                   51   8e-07
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)                 29   2.7  

>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/56 (50%), Positives = 44/56 (78%), Gaps = 2/56 (3%)
 Frame = +3

Query: 33  KIAAEVSAPLAKTDEIVLVGDNG--TTGDVARLASGIPPALKTLTGLDLTQVLKRL 194
           K+AAEV+APLAKT EIV++ D+G   +G++++L   +PPA++ LTG DL+ VL ++
Sbjct: 603 KVAAEVAAPLAKTGEIVIINDDGNSVSGELSKLLGQLPPAIQALTGTDLSGVLNKI 658


>SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)
          Length = 393

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 24/66 (36%), Positives = 46/66 (69%), Gaps = 7/66 (10%)
 Frame = +3

Query: 3   IMALVLEALPKIAAEVSAPLAKTDEIVL-------VGDNGTTGDVARLASGIPPALKTLT 161
           I+ +VLE +PKIAAE++APL++ ++I +       VG +  TG++  + + +P A++ LT
Sbjct: 328 IVDMVLETMPKIAAEIAAPLSQVNKITMVSNGKGEVGASKVTGEILDIVAKLPKAVEALT 387

Query: 162 GLDLTQ 179
           G+D+++
Sbjct: 388 GIDISK 393


>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
          Length = 437

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 15  VLEALPKIAAEVSAPLAKTDEIVLVGDNGTTGDVARL 125
           VL+ + ++ AEV  P  + DE+VLVG +     + +L
Sbjct: 346 VLQPIRRVLAEVELPKEEVDEVVLVGGSTRVPKIRQL 382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,191,216
Number of Sequences: 59808
Number of extensions: 372349
Number of successful extensions: 856
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)