Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0031
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68118-2|CAA92188.2|  165|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z68118-2|CAA92188.2|  165|Caenorhabditis elegans Hypothetical
           protein R01E6.2 protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 127 ARRATSPVVPLSPTRTISSVFANGADTSAAIFGSAS 20
           A+ +T P +P+ PT  + S F  GADT+  IFG+ +
Sbjct: 79  AKNSTVPPMPIRPT--LPS-FCTGADTTMYIFGACT 111


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 499 VRKDKPAEY*RMTSFAVFLSILEFIVLYIFTT---NH*LIAHKNFVLMNDDLNF*NVILV 669
           V++ KP  Y  + +  VF      I++YI T+   N   I   N++++ D +    ++ +
Sbjct: 224 VQRSKPHNYIFLQTMVVFTLKSIHILIYIMTSHGGNFSPILFTNWIIVTDFITTPLIVQM 283

Query: 670 SFLCC 684
           S+L C
Sbjct: 284 SYLSC 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,476,751
Number of Sequences: 27780
Number of extensions: 294195
Number of successful extensions: 662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)