Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0030
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF317421-1|AAK69599.1|  235|Caenorhabditis elegans lysosomal-ass...    31   1.0  
L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical pr...    30   1.3  
L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   3.1  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      29   3.1  
Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z99280-1|CAB16499.1|  225|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF016427-2|AAB65352.1|   54|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical
           protein C05E11.3 protein.
          Length = 235

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -3

Query: 396 ELIGTVLGIIDVVRIFVAYTRTHALQHRADTAFQLSTLVTVLLENLVGAPFGLASSISVF 217
           E+IG  LGI  V  +FVA +R  AL        Q+  ++  ++  LV     L +  +VF
Sbjct: 98  EMIGLGLGIFAVFLLFVALSRNSALLVVPHLVMQVIAILCFIVV-LVCGTIALCTDSAVF 156

Query: 216 RTFKSTSPLRQFP 178
               + +P  + P
Sbjct: 157 YRLINAAPFMEHP 169


>AF317421-1|AAK69599.1|  235|Caenorhabditis elegans
           lysosomal-associated transmembraneprotein protein.
          Length = 235

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -3

Query: 396 ELIGTVLGIIDVVRIFVAYTRTHALQHRADTAFQLSTLVTVLLENLVGAPFGLASSISVF 217
           E+IG  LGI  V  +FVA +R  AL        Q+  ++  ++  LV     L +  +VF
Sbjct: 98  EMIGLGLGIFAVFLLFVALSRNSALLVVPHLVMQVIAILCFIVV-LVCGTIALCTDSAVF 156

Query: 216 RTFKSTSPLRQFP 178
               + +P  + P
Sbjct: 157 YRLINAAPFMEHP 169


>L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical
           protein ZC262.5 protein.
          Length = 54

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 62  AAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRT 175
           AAG+    +SQI A V  QCTK  A  K P  +A L+T
Sbjct: 6   AAGLNYVRYSQIAAQVVRQCTKGGANVKKP--QATLKT 41


>L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical
           protein R05D3.6 protein.
          Length = 54

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 62  AAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRT 175
           AAG+    +SQI A V  QCTK  A  K P  +A L+T
Sbjct: 6   AAGLNYVRYSQIAAQVVRQCTKGGANVKKP--QATLKT 41


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 361 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 456
           ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 66  NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 361 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 456
           ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 66  NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 361 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 456
           ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 66  NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical
           protein R05D11.9 protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 575 NFCAFFNKAQVIGGFHSGEALFQFKKHVLRFSVFCWKHSGPPSAMN 438
           NFC F  K+     F +   L   +  + +F VFC   +G P   N
Sbjct: 195 NFCNFVTKSCTTAQFTNANKLLLIRYLLKQFHVFCQFSTGDPEVDN 240


>Z99280-1|CAB16499.1|  225|Caenorhabditis elegans Hypothetical
           protein Y57G11B.5 protein.
          Length = 225

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 32  MWKTVLITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGL 199
           M+K+++ +   A  +A   S +T  +        AED  P   A  R F  C K +
Sbjct: 1   MFKSLVFSALLAYAVAAPMSSMTTAIDRIDQIFQAEDSTPACNAETRRFNACFKDI 56


>AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.4 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 149 PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN 247
           PE E  +RT G+   G++D+N  +   + A+PN
Sbjct: 64  PEFEVEIRTNGHIYAGILDINGAEPGDKGAEPN 96


>AF016427-2|AAB65352.1|   54|Caenorhabditis elegans Hypothetical
           protein F32D1.2 protein.
          Length = 54

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 62  AAGVLADDFSQITAVVTSQCTK---NNAEDKVPEVEAALRTFGN 184
           AAG+    +SQI A +T +CTK     A  K PE    + T+ N
Sbjct: 6   AAGLNYVRYSQIAAEITRKCTKQVGGKAAVKKPEATLKITTWEN 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,914
Number of Sequences: 27780
Number of extensions: 330258
Number of successful extensions: 943
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)