Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0029
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 37 0.003
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.17
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.92
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 28 1.6
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.1
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 2.8
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 27 2.8
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 3.7
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 3.7
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 27 3.7
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 6.5
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 26 6.5
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 6.5
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 8.6
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 8.6
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 36.7 bits (81), Expect = 0.003
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Frame = +2
Query: 257 NKELETALRQHQNVIEDQAQEIEYLTKQTVALRE-VNDS-RLRIY-EQLELSIQDLERAN 427
N E + L++ + ++++ +E+ L K LRE DS +LR+ EQLEL QDL++A
Sbjct: 497 NNEFDRQLKEQEEDLQNKEEELTELRK---LLREQTQDSQKLRLLVEQLELERQDLKQAG 553
Query: 428 HRLAVDHAAD-KKHIKSLCSNIDTVEAKAKNYKRLWTNLTFN*RSTGEELNE 580
+ ++D + IKSL S++ +A+ +++ L +LNE
Sbjct: 554 ENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNE 605
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.1 bits (67), Expect = 0.17
Identities = 29/109 (26%), Positives = 53/109 (48%)
Frame = +2
Query: 254 SNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHR 433
SNK L L +++ VI + ++IE L K +A +N EQLE +Q + A +
Sbjct: 1238 SNKSLRENLERNEEVITELREKIETL-KTDLANFRLNK------EQLESQLQTEKAAVKK 1290
Query: 434 LAVDHAADKKHIKSLCSNIDTVEAKAKNYKRLWTNLTFN*RSTGEELNE 580
L + K+H + + ++++ + + + RL L + EELN+
Sbjct: 1291 LENSNEEYKRHNQEILLSLNSSTSTSSDASRLKNELVSK-ENLIEELNQ 1338
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.7 bits (61), Expect = 0.92
Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 10/170 (5%)
Frame = +2
Query: 44 EPLRIMINLCDKNTSMYRIVP*TVNNVRSNGSGE--EEIRWKRRVGARRYHLTSLYARRF 217
+ L I + +N+S + + V+ N E +R ++ + +Y LT L R
Sbjct: 1168 DSLSQQITVLQQNSSENLNISANLEAVQDNDLRELVSYLRHEKEIMDNKYELTILDNRGL 1227
Query: 218 ATGGRTRENPTRSNKELETALRQHQNVIEDQ--------AQEIEYLTKQTVALREVNDSR 373
++ ++ T + +LE Q V DQ +QE++ L + LR+ ND++
Sbjct: 1228 NQQVKSLQS-TVDSLQLELNRLQSLPVSNDQTDTPIISGSQEVQLLYESNSVLRKDNDAK 1286
Query: 374 LRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKAKNYK 523
L ++LE ++ L + + L + K I + ++++ ++ +K
Sbjct: 1287 LGKIQELEKEVEKLNASLNPLQTEINELKAEIGAKTASLNLMKEYNSRWK 1336
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 200 LYARRFATGGRTRENPTRSNKELETALRQH--QNVIEDQAQEIEYLTKQTVALREVNDSR 373
++ T G+ ++ R K R + + + + QE++ L KQ E+ +SR
Sbjct: 76 MFGALLGTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEILESR 135
Query: 374 LRIYEQLELSIQDLERANHRLAVDH 448
L+ ++ L +L+R + + +D+
Sbjct: 136 LQEQRKVALDELELDRNDLKKVLDN 160
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 299 IEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQ 409
I+ + Q I+ + T L NDSR+RIY + S++
Sbjct: 447 IQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLE 483
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.1 bits (57), Expect = 2.8
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 161 KRRVGARRYHLTSLYARRFATGGRTRENPTR-SNKELE-TALRQHQNVIEDQAQEIEYLT 334
+ ++ A R AR A + +E + S KE E +L + E Q +E+E T
Sbjct: 5 REKINAARAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEET 64
Query: 335 KQTVALREVNDSRLRIYEQLELSIQDLE 418
KQ + D + EQL ++ LE
Sbjct: 65 KQLRLKADNEDIQKTEAEQLSRKVELLE 92
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 143 EEEIRWKRRVGARRYHLTSLYARRFATGGRTRENPTRSNKELETA 277
E+ +RWKR RR++ L+ + R + N LETA
Sbjct: 246 EKRLRWKRENQLRRHNFVGLFVELSKLLVKDRIDKNTWNSTLETA 290
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +2
Query: 215 FATGGRTRENPTRSNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQ 391
F T T R KEL T H + I +AQE E +Q +E+ SRL+ E+
Sbjct: 328 FTTKRATHSELLRCYKELVTPKISHVDSISIKAQE-EERKRQAEIEKEIRQSRLQEEER 385
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 257 NKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRL---RIYEQLELSIQDLE 418
NKELE +++ N I+ +E+E ++ L + + + I+E L L + DLE
Sbjct: 1112 NKELEAKVKECLNNIKSLTKELENKEEKCQNLSDASLKYIELQEIHENLLLKVSDLE 1168
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 26.6 bits (56), Expect = 3.7
Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Frame = +2
Query: 119 NVRSNGSGEEEIRWKRRVGARRYHLTSLYARRF-ATGGRTRENPTRSNK-ELETALRQHQ 292
++R +G + KR+ AR H SLYA++ + + R K +++ ++QH+
Sbjct: 10 SIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQMKKTIKQHE 69
Query: 293 --NVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKH 466
N + + T L +S+ ++ + + A + + +
Sbjct: 70 ERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVPLPQVRGVAE 129
Query: 467 IKSLCSNIDTVEAKAKNYKRLWTNLTF 547
+ + I T ++K ++KR+ T TF
Sbjct: 130 -EEMFKVIRTGKSKKNSWKRMITKATF 155
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 288 IKMLLKIKHKKSNILQSKRLLCE 356
++ L K +++KSN+L + R LCE
Sbjct: 266 LESLAKSQYRKSNVLAADRSLCE 288
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 505 QSEELQKTVDELNVQLEIYRRRAER 579
Q LQ ++ELN Q+E+ +R+ E+
Sbjct: 19 QDHSLQMALEELNQQIEVIQRQEEQ 43
>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 144 SPDPLLLTLFTVYGTMRYIDVF 79
SP P L LF+V G + +DVF
Sbjct: 48 SPSPFLRWLFSVLGVLMSMDVF 69
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 236 RENPTRSNKELETALRQHQNVIEDQAQEI-EYLTKQTVALREVNDSRLRIYEQLELSIQD 412
REN R ++E+E L Q+ + D ++ + E L K ++ +++L I+ E I
Sbjct: 400 RENQKRIDQEIEQFLVVPQSQVPDASETVKERLLKLNMSTTTAINNQLNIFRIFEKMIFT 459
Query: 413 LE 418
L+
Sbjct: 460 LQ 461
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 420 ELTTD*LSIMQPTRNTLSHYAQTLTLWRPKRRTTKDC 530
ELT D + T N LSHY T L RRT ++C
Sbjct: 137 ELTKDGYELQIQT-NYLSHYLFTELLLPTLRRTAEEC 172
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 135 DLVKKKFGGNEELEQDDITSRRCMLDDLQLAAELGKTLLEATRNSRQPFASIKMLLKIKH 314
DLVK G ++ D+ S +C+ + +EL + +++NS SIK L K +
Sbjct: 896 DLVKSLISGEVQVSSFDLESAKCV--SYSIVSELENNAIYSSKNS-FTLLSIKGLNKDED 952
Query: 315 KK 320
K
Sbjct: 953 HK 954
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 260 KELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRL 436
KE+ AL + + + +EIE L + L+ + + + + +I DLE N L
Sbjct: 936 KEVSQALAEANEKLNARDEEIERLKVDIIGLQNASLNMQSLKDSDNRTISDLESKNKEL 994
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,773
Number of Sequences: 5004
Number of extensions: 47658
Number of successful extensions: 175
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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