Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0029
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0874 - 28429982-28430083,28430284-28430472,28430585-284306... 38 0.008
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 31 0.96
04_04_1174 - 31473859-31474269,31476011-31476420,31477102-31477261 31 0.96
07_03_1791 - 29552218-29552427,29552858-29553358,29560369-295604... 30 2.2
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 30 2.2
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 29 2.9
02_01_0642 - 4803464-4805665,4806231-4806320 29 2.9
11_06_0321 - 22341267-22342565 29 3.9
08_01_0655 + 5646567-5646650,5646675-5647697,5648227-5648382,564... 29 3.9
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 29 3.9
04_04_1650 - 35051728-35051823,35052054-35052162,35052270-350524... 29 5.1
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 28 9.0
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 28 9.0
>03_05_0874 -
28429982-28430083,28430284-28430472,28430585-28430655,
28430754-28431021,28432579-28432818,28433791-28433979
Length = 352
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Frame = +2
Query: 227 GRTRENPTRSNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSI 406
G E ++N +L+ L + I + E+ L + + L E+ ++ +++
Sbjct: 203 GEELEEMKKANIKLQEELADQKKAISEVESEVRGL-QSNLTLAEIKSKEAKLQREVQEME 261
Query: 407 QDLERANHRLAVDHAADKKHIK-SLCSNIDTVEAKAKNYKRLWTNLTFN*RSTGEELNE 580
+ L + + + + DKK I+ S ++ + + +K LW N+T N +E E
Sbjct: 262 EKLNKLRNGVILVKPEDKKIIEESFSEKVNQWRKRKRMFKELWDNITENSPKDQKEFKE 320
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 31.1 bits (67), Expect = 0.96
Identities = 21/87 (24%), Positives = 41/87 (47%)
Frame = +2
Query: 263 ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAV 442
EL+ + + +++I + E+E + Q V L+E R +++ + L R+N +L
Sbjct: 863 ELKLQMDESRSLITNLKDELEQVEAQKVELKENQLESHRRLSEVQEDSEALRRSNAKL-- 920
Query: 443 DHAADKKHIKSLCSNIDTVEAKAKNYK 523
A H+ C ++ T+ A K K
Sbjct: 921 --QATVDHVVEECKSLQTLTADLKKQK 945
>04_04_1174 - 31473859-31474269,31476011-31476420,31477102-31477261
Length = 326
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 125 RSNGSGEEEIRWKRRVGARRYHLTSLYARRFATGGRTRENPTRS 256
R+ +G RVGA ++ SL+ R++ATG RT TRS
Sbjct: 68 RARAAGRRRREDAARVGATEWYFFSLHDRKYATGQRT-NRATRS 110
>07_03_1791 -
29552218-29552427,29552858-29553358,29560369-29560449,
29563783-29564015,29564976-29565042
Length = 363
Score = 29.9 bits (64), Expect = 2.2
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Frame = +2
Query: 248 TRSNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLER-- 421
T +KEL + R+ ++QAQ + L ++ AL E R R+ +Q E ++ ER
Sbjct: 119 THGSKELHLSQREQDARSQEQAQRAQELERRAKALEE----RARLLDQRESTLASHERTA 174
Query: 422 ----ANHRLAVDHAADKKHIKSLCSNIDTVEAKAKNYKRLW 532
A+ RL + AA++ + + + A+ K LW
Sbjct: 175 AEAEASLRLCEEAAAERDR-----TTLAVKASAARRAKELW 210
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +2
Query: 203 YARRFATGGRTRENPTRSNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRI 382
+ +R+ G NKE ++QH + D ++EIE K + EV + L
Sbjct: 115 FMKRYGGGKADTALAKSLNKEYGPVIKQHMQYVLDHSEEIEKTLKVQAQVSEVKNIMLEN 174
Query: 383 YEQL 394
E++
Sbjct: 175 IEKV 178
>07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 200 LYARRFATGGRTRENPTRSNKELETALRQHQNVIEDQAQEIEYLTK--QTVALREVNDSR 373
++A GGR + ++ LET QH ++I + ++ TK QT+ R
Sbjct: 1268 MHAMAVKHGGRFVDTFLKAFNFLETHFGQHNDIILQMIKSLQKATKTIQTICAEAKGHKR 1327
Query: 374 LRIYEQLELSIQDLER 421
I ++ ++ + LER
Sbjct: 1328 TMITSKIPVAKRSLER 1343
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/89 (21%), Positives = 42/89 (47%)
Frame = +2
Query: 263 ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAV 442
E A Q + I++ EI+ ++ + N+ R ++L+++ Q+LER N
Sbjct: 240 EANQAAEQQEATIKELRSEIK---RKEIDFSRSNELRKANEQKLKIAEQELERQNMGWLA 296
Query: 443 DHAADKKHIKSLCSNIDTVEAKAKNYKRL 529
K+ + C ++D ++ ++KR+
Sbjct: 297 AQKELKEVAQLACKDMDGIKDTVSDFKRV 325
>11_06_0321 - 22341267-22342565
Length = 432
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 214 ICNWRPNSGKPYSKQQGTRDSPSPASKC 297
IC+W PN+G+P K G+R S S C
Sbjct: 400 ICSWIPNNGQPDWKIIGSRRSGSFVYNC 427
>08_01_0655 +
5646567-5646650,5646675-5647697,5648227-5648382,
5648499-5648529,5648636-5648808
Length = 488
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 144 KKKFGGNEELEQDDITSRRCMLDDLQLAAELGKTLLEATRNSRQPFASIKML 299
KKKF G + L D++ L+L A+ G+ +L + F+++K L
Sbjct: 337 KKKFNGGKVLGGDNVLHSLSNARSLELLADAGEVILNRELKTCPTFSNLKTL 388
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 230 RTRENPTRSNKEL-ETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLEL 400
R R R +EL E A + +E+ E+E L ++ V++RE + R+ + E+
Sbjct: 213 RQRVETERKARELMEEACEELSKEVEEDQAEVEALRRECVSMREEMEEERRMLQMAEV 270
>04_04_1650 -
35051728-35051823,35052054-35052162,35052270-35052416,
35052516-35052637,35052726-35052825,35052895-35053095,
35053202-35053407,35053778-35053803,35054239-35054327,
35054427-35054635,35055577-35055672,35055754-35055924
Length = 523
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 305 DQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRL 436
D+ +EY + R ND R+ E L +I LE HRL
Sbjct: 111 DKLTSVEYFFTSKIRCRVGNDVHERVNELLSKAIHGLENEFHRL 154
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/64 (21%), Positives = 27/64 (42%)
Frame = +2
Query: 203 YARRFATGGRTRENPTRSNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRI 382
+ +R+A G N++ + L++H D +EI L K + EV +
Sbjct: 89 FTKRYAGGKAATAAANSLNRDFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMEN 148
Query: 383 YEQL 394
E++
Sbjct: 149 IEKV 152
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 236 RENPTRSNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLE 397
R+ T N+ELE ++Q Q E + L + T +L E+N S L + ++LE
Sbjct: 627 RKTVTTLNRELEALVKQLQMDSEARKALEADLDEATKSLDEMNRSALSLSKELE 680
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,026,471
Number of Sequences: 37544
Number of extensions: 316122
Number of successful extensions: 905
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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