Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0029
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.99 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.99 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.3  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 331 KIFDFLCLIFNNILMLAKGCLEFLVASSRVFP 236
           +IF+ +C++   ++    GCL+FLV   + FP
Sbjct: 278 RIFNLICMML--LIGHWSGCLQFLVPMLQGFP 307


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 331 KIFDFLCLIFNNILMLAKGCLEFLVASSRVFP 236
           +IF+ +C++   ++    GCL+FLV   + FP
Sbjct: 246 RIFNLICMML--LIGHWSGCLQFLVPMLQGFP 275


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 425 NHRLAVDHAADKKHIKSLCSNID 493
           NH   +   A K ++KSL SN D
Sbjct: 249 NHEKMLREQAKKMNVKSLVSNQD 271


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 425 NHRLAVDHAADKKHIKSLCSNID 493
           NH   +   A K ++KSL SN D
Sbjct: 249 NHEKMLREQAKKMNVKSLVSNQD 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,003
Number of Sequences: 438
Number of extensions: 2993
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)