Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0028
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    28   1.5  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   6.0  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   7.9  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    25   7.9  

>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 534 FRCQTTQMLHLFGQ*TFVSYHVFSSVPAIKSERASEMLLFCFI 662
           F C    +LH  G  TF  Y V + +  +  ER + +   C +
Sbjct: 135 FSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLL 177


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 275 YLCNKIYKRSFCAPDNHIMGHQYTFNSDYVAILI 376
           Y C K +  SF +P+ H+ G+    N D V + I
Sbjct: 448 YWCLKQHDSSFVSPNKHLDGNPSHANEDMVRLRI 481


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 129 MCS-MGFTQFLHHVTRQTKKH 188
           MCS +GFT FL+H T  T K+
Sbjct: 189 MCSGVGFTMFLYHKTYLTDKN 209


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 11  YIYCCKILNHVQEMLCDMVYD*NTVV 88
           ++YCCK L HV  + C+  +   TV+
Sbjct: 204 HVYCCKHLAHVNCINCNTPWANATVI 229


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 100 LFSVRFGFNECAQWASH 150
           LFS  FG N+C  W  H
Sbjct: 147 LFSNAFGENQCRNWIQH 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,787
Number of Sequences: 5004
Number of extensions: 72266
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)