Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0028
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761...    28   8.3  
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    28   8.3  

>07_03_1619 +
           28174991-28175804,28175945-28175968,28176075-28176170,
           28176285-28176466,28176623-28176836,28177262-28177499,
           28177709-28177865,28177950-28178246
          Length = 673

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -2

Query: 321 LSGAQKDLLYILLHKYVCIIICGIRDAVSFYDKQLSLRIFEFG 193
           + G  + LLY+  H  VC++   ++ +    D +++ +I +FG
Sbjct: 460 IHGISQGLLYLHEHSTVCVVHRDLKASNVLLDAEMNAKISDFG 502


>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = -2

Query: 303 DLLYILLHKYVC-IIICGIR 247
           DL Y++LH+YV  +IICG++
Sbjct: 260 DLSYLVLHRYVKEVIICGLK 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,491,200
Number of Sequences: 37544
Number of extensions: 372268
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)