Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0028
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73896-3|CAA98060.1| 208|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z82272-7|CAB05217.1| 280|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF022973-2|AAC25800.2| 527|Caenorhabditis elegans Hypothetical ... 28 5.6
AF022973-1|AAT81194.1| 513|Caenorhabditis elegans Hypothetical ... 28 5.6
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 7.4
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 7.4
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 7.4
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 28 7.4
AF098995-10|AAC67487.2| 411|Caenorhabditis elegans Hypothetical... 27 9.8
>Z73896-3|CAA98060.1| 208|Caenorhabditis elegans Hypothetical
protein F09E8.5 protein.
Length = 208
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 137 NGLHTILASCHQTN*KTYQPNSNILNDNCLS*NDTASRIP 256
NG++ + CH YQP N LN N + T S+ P
Sbjct: 162 NGMNKVAVVCH------YQPQGNYLNQNIYTSGTTCSKCP 195
>Z82272-7|CAB05217.1| 280|Caenorhabditis elegans Hypothetical
protein F55G11.10 protein.
Length = 280
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 557 ASPIWTINFC-KLPCFFFSTCHKKRACIGN-AIVLFYHESKTLQSETGT 697
A+P + + + ++ + STC K +C GN +++LF K ++ TGT
Sbjct: 197 ATPYYNLKYRDEIISYDVSTCTAKMSCTGNDSLILFSGSLKPVKFPTGT 245
>AF022973-2|AAC25800.2| 527|Caenorhabditis elegans Hypothetical
protein F25G6.7a protein.
Length = 527
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 563 PIWTINFCKLPCFFFSTCHKKRACIGNAIVLFYHESKTLQSET 691
P W + CF F H + +G AIV + S T +ET
Sbjct: 50 PSWRFMTSIMLCFCFGCVHLMNSNMGMAIVCMVNSSATYDNET 92
>AF022973-1|AAT81194.1| 513|Caenorhabditis elegans Hypothetical
protein F25G6.7b protein.
Length = 513
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 563 PIWTINFCKLPCFFFSTCHKKRACIGNAIVLFYHESKTLQSET 691
P W + CF F H + +G AIV + S T +ET
Sbjct: 36 PSWRFMTSIMLCFCFGCVHLMNSNMGMAIVCMVNSSATYDNET 78
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 596 CFFFSTCHKKRACIGNAIVLFYHESKTLQSETG 694
C +S C K+ C NAI L +S T Q G
Sbjct: 485 CRVYSACSKRNTCDKNAICLNRFDSYTCQCRPG 517
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 596 CFFFSTCHKKRACIGNAIVLFYHESKTLQSETG 694
C +S C K+ C NAI L +S T Q G
Sbjct: 1069 CRVYSACSKRNTCDKNAICLNRFDSYTCQCRPG 1101
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 596 CFFFSTCHKKRACIGNAIVLFYHESKTLQSETG 694
C +S C K+ C NAI L +S T Q G
Sbjct: 485 CRVYSACSKRNTCDKNAICLNRFDSYTCQCRPG 517
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 596 CFFFSTCHKKRACIGNAIVLFYHESKTLQSETG 694
C +S C K+ C NAI L +S T Q G
Sbjct: 1069 CRVYSACSKRNTCDKNAICLNRFDSYTCQCRPG 1101
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 596 CFFFSTCHKKRACIGNAIVLFYHESKTLQSETG 694
C +S C K+ C NAI L +S T Q G
Sbjct: 1069 CRVYSACSKRNTCDKNAICLNRFDSYTCQCRPG 1101
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 563 PIWTINFCKLPCFFFSTCHKKRACIGNAIVLFYHESKTLQSETGTCW 703
PI IN KL +T + +GNAI ++++ ++S GT W
Sbjct: 629 PIPVINAPKLLGITLNTMTGTKDHVGNAIKSMQNKTRVIKSMAGTSW 675
>AF098995-10|AAC67487.2| 411|Caenorhabditis elegans Hypothetical
protein F58E1.10 protein.
Length = 411
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 452 KNLFMEVYLLKINNNISHVDNSRAWRLF*VPDHTNASPIWTINFC 586
KN M + LL++ N ++DNS + + V DH + + +C
Sbjct: 34 KNTVMHIKLLQLCQNAVNIDNSLLYEVAVVEDHLHPIRLDLDEYC 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,540,445
Number of Sequences: 27780
Number of extensions: 394893
Number of successful extensions: 733
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -