Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0028
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.2  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 239 YHFMINNYH*EYLNLVDMFFSLSGDMMQELCEAH*AHSLKPKRTENSFTRQLL 81
           Y F+   +H + + L D +F + GD    L   H A  +    T N   R+ L
Sbjct: 130 YEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHL 182


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 239 YHFMINNYH*EYLNLVDMFFSLSGDMMQELCEAH*AHSLKPKRTENSFTRQLL 81
           Y F+   +H + + L D +F + GD    L   H A  +    T N   R+ L
Sbjct: 130 YEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHL 182


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 239 YHFMINNYH*EYLNLVDMFFSLSGDMMQELCEAH*AHSLKPKRTENSFTRQLL 81
           Y F+   +H + + L D +F + GD    L   H A  +    T N   R+ L
Sbjct: 181 YEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHL 233


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 239 YHFMINNYH*EYLNLVDMFFSLSGDMMQELCEAH*AHSLKPKRTENSFTRQLL 81
           Y F+   +H + + L D +F + GD    L   H A  +    T N   R+ L
Sbjct: 130 YEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHL 182


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 322 VIGSTKRPFIYFITQICMY 266
           ++ +TK+ FIY +  +C++
Sbjct: 1   MVSNTKQAFIYSLALLCLH 19


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 514 FTRMAVVLGARPHKCFTY 567
           F R   +  A PHK FTY
Sbjct: 598 FRRQERMRYAAPHKAFTY 615


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,523
Number of Sequences: 438
Number of extensions: 5860
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)