Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0028
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66550.1 68414.m07561 WRKY family transcription factor simila...    29   3.9  
At5g18240.5 68418.m02144 myb family transcription factor contain...    28   6.9  
At5g18240.4 68418.m02143 myb family transcription factor contain...    28   6.9  
At5g18240.3 68418.m02142 myb family transcription factor contain...    28   6.9  
At5g18240.2 68418.m02141 myb family transcription factor contain...    28   6.9  
At5g18240.1 68418.m02140 myb family transcription factor contain...    28   6.9  

>At1g66550.1 68414.m07561 WRKY family transcription factor similar
           to DNA-binding protein 3 [Nicotiana tabacum] GI:7406995
          Length = 254

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 617 HKKRACIGNAIVLFYHESKTLQSETGTCW 703
           H+++ C+   +V + H+S+T+    G  W
Sbjct: 85  HRRKLCVAEGLVNYNHDSRTMCPNDGFTW 113


>At5g18240.5 68418.m02144 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 400

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 167 HQTN*KTYQPNSNILNDNCLS*NDTASRIPQII 265
           HQ   KTY PNS++  D+CL+ ++   + P+++
Sbjct: 235 HQQMQKTYPPNSSL--DSCLTSSEGTQKAPKML 265


>At5g18240.4 68418.m02143 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 402

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 167 HQTN*KTYQPNSNILNDNCLS*NDTASRIPQII 265
           HQ   KTY PNS++  D+CL+ ++   + P+++
Sbjct: 237 HQQMQKTYPPNSSL--DSCLTSSEGTQKAPKML 267


>At5g18240.3 68418.m02142 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 396

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 167 HQTN*KTYQPNSNILNDNCLS*NDTASRIPQII 265
           HQ   KTY PNS++  D+CL+ ++   + P+++
Sbjct: 231 HQQMQKTYPPNSSL--DSCLTSSEGTQKAPKML 261


>At5g18240.2 68418.m02141 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 396

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 167 HQTN*KTYQPNSNILNDNCLS*NDTASRIPQII 265
           HQ   KTY PNS++  D+CL+ ++   + P+++
Sbjct: 231 HQQMQKTYPPNSSL--DSCLTSSEGTQKAPKML 261


>At5g18240.1 68418.m02140 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 402

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 167 HQTN*KTYQPNSNILNDNCLS*NDTASRIPQII 265
           HQ   KTY PNS++  D+CL+ ++   + P+++
Sbjct: 237 HQQMQKTYPPNSSL--DSCLTSSEGTQKAPKML 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,907,569
Number of Sequences: 28952
Number of extensions: 337564
Number of successful extensions: 616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)