Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0027
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30930.1 68415.m03771 expressed protein 38 0.005
At3g53040.1 68416.m05846 late embryogenesis abundant protein, pu... 34 0.086
At4g36600.1 68417.m05195 late embryogenesis abundant domain-cont... 33 0.15
At1g06540.1 68414.m00693 expressed protein 32 0.35
At1g50620.1 68414.m05688 PHD finger family protein contains Pfam... 31 1.1
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide... 30 1.4
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide... 30 1.4
At4g21020.1 68417.m03041 late embryogenesis abundant domain-cont... 30 1.8
At2g36640.1 68415.m04494 late embryogenesis abundant protein (EC... 30 1.8
At5g43870.1 68418.m05363 expressed protein 29 3.2
At2g29605.1 68415.m03595 hypothetical protein 29 3.2
At5g15690.1 68418.m01835 hypothetical protein very low similarit... 28 5.6
At5g08660.1 68418.m01031 expressed protein contains Pfam domain ... 28 5.6
At3g10730.1 68416.m01292 sad1/unc-84-like 2 family protein conta... 28 7.4
At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger) fa... 28 7.4
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 27 9.8
At5g07020.1 68418.m00795 proline-rich family protein 27 9.8
At1g72100.1 68414.m08334 late embryogenesis abundant domain-cont... 27 9.8
>At2g30930.1 68415.m03771 expressed protein
Length = 164
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +2
Query: 32 ASAIEKGTTAIGSAKETVANTVSTTVDATKNVAAAVVEKGSTIVGTAKDTLAN---TVHT 202
A +EK T+A+ AKE+V +T ++V A++ + T+ TA+ TL + TV
Sbjct: 2 AQFLEKATSALSEAKESVTST-------AESVTASLTDAEKTVNQTARSTLTDAETTVAA 54
Query: 203 TVDTTKNVAASTVEKGA 253
+V+T K AA+ +K +
Sbjct: 55 SVETVKTEAAAAPDKAS 71
Score = 35.1 bits (77), Expect = 0.049
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 337 VEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTE 510
+EK TS + AK++V +T + + + + + S + A+ TVA +V+ KTE
Sbjct: 5 LEKATSALSEAKESVTSTAESVTASLTDAEKTVNQTARSTLTDAETTVAASVETVKTE 62
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +2
Query: 2 ATVDATKNVAASAIEKGTTAIGSAKETVAN---TVSTTVDATKNVAAAVVEKGSTIVGTA 172
+ ++V AS + T +A+ T+ + TV+ +V+ K AAA +K S + A
Sbjct: 18 SVTSTAESVTASLTDAEKTVNQTARSTLTDAETTVAASVETVKTEAAAAPDKASGVSTQA 77
Query: 173 KDTLANTVHTTVDTTKNV 226
KD + ++ K++
Sbjct: 78 KDAVDKAFSRGIEGAKSL 95
>At3g53040.1 68416.m05846 late embryogenesis abundant protein,
putative / LEA protein, putative similar to LEA protein
in group 3 [Arabidopsis thaliana] GI:1526424; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 479
Score = 34.3 bits (75), Expect = 0.086
Identities = 18/88 (20%), Positives = 37/88 (42%)
Frame = +1
Query: 268 AKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKG 447
AKD A + D T A+ + G S IG KD+ +T + +K
Sbjct: 262 AKDKTAEKVGEYRDYTAEKATETKDAGVSKIGELKDSAVDTAKRAMGFLSGKTEETKQKA 321
Query: 448 TSLIETAKDTVAQTVDKTKTELHQQLIQ 531
+TAK+ + + ++ + ++ + ++
Sbjct: 322 VETKDTAKEKMDEAGEEARRKMEEMRLE 349
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/78 (26%), Positives = 28/78 (35%)
Frame = +1
Query: 268 AKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKG 447
AKD A T + T A A +K +G KD A DTT +
Sbjct: 145 AKDRTADKTKETAEYTAEKAREAKDKTADKLGEYKDYTAEKAKEAKDTTAEKLGEYKDYT 204
Query: 448 TSLIETAKDTVAQTVDKT 501
+ AKD A+ +T
Sbjct: 205 VDKAKEAKDKTAEKAKET 222
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/78 (30%), Positives = 27/78 (34%)
Frame = +1
Query: 268 AKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKG 447
AKD A L D T A A + +G KD TVD K EK
Sbjct: 167 AKDKTADKLGEYKDYTAEKAKEAKDTTAEKLGEYKDY-------TVDKAKEAKDKTAEKA 219
Query: 448 TSLIETAKDTVAQTVDKT 501
E D +T DKT
Sbjct: 220 KETAEYTSDKARETKDKT 237
>At4g36600.1 68417.m05195 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to SP|P20075 Embryonic protein
DC-8 {Daucus carota}; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 335
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/79 (29%), Positives = 31/79 (39%)
Frame = +1
Query: 262 GTAKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVE 441
G AKD DA + A ++ T G AKD+ T + +KN A +
Sbjct: 191 GQAKDFAYDKAAHAKDAAYNKAEDVIKMATDTSGEAKDSAYGTYERFKEGSKNAKDIASD 250
Query: 442 KGTSLIETAKDTVAQTVDK 498
K + ETA V DK
Sbjct: 251 KAHDVRETAGRAVDYAKDK 269
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Frame = +1
Query: 262 GTAKDTVATTLNTTVDATKSVASSAVEKGTSL---IGTAKDTVANTVSTTVDTTKNVAAS 432
G AKD + + D A +K S G AKD + + D N A
Sbjct: 155 GQAKDMAYDKVGSAYDKAGQAKDMAYDKAGSASEKAGQAKDFAYDKAAHAKDAAYNKAED 214
Query: 433 AVEKGTSLIETAKDTVAQTVDKTK 504
++ T AKD+ T ++ K
Sbjct: 215 VIKMATDTSGEAKDSAYGTYERFK 238
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 11 DATKNVAASAIEKGTTAIGSAKETVANTVSTTVDATKNVAAAVVEKGSTIVGTAKDTLAN 190
D + A SA EK G AK+ + + DA N A V++ + G AKD+
Sbjct: 177 DMAYDKAGSASEKA----GQAKDFAYDKAAHAKDAAYNKAEDVIKMATDTSGEAKDSAYG 232
Query: 191 TVHTTVDTTKN 223
T + +KN
Sbjct: 233 TYERFKEGSKN 243
>At1g06540.1 68414.m00693 expressed protein
Length = 125
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +2
Query: 26 VAASAIEKGTTAIGSAKETV---ANTVSTTV--DATKNVAAAVVEKGSTIV 163
+A S ++K T+A+G AK+TV A T T V DA NV + ++ T++
Sbjct: 1 MADSLLQKATSALGEAKQTVMASAETAKTNVVKDAVDNVVSRGIDGAKTLL 51
>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 629
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 265 TAKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEK 444
TAK T + + TV+A + VEK S + A+ N + D N VEK
Sbjct: 427 TAKPTKDSAMEQTVEAEDVAMNPIVEKAMSEMVEAEGAAINPIVEAEDGAMN---PIVEK 483
Query: 445 GTSLIETAKD-TVAQTVD 495
S I A+D + Q VD
Sbjct: 484 AMSQIVEAEDAAINQAVD 501
>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 810
Score = 30.3 bits (65), Expect = 1.4
Identities = 27/108 (25%), Positives = 48/108 (44%)
Frame = +1
Query: 208 RYYEKCSSIDR*KGRLLIGTAKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVAN 387
R+ EK SS+D + +I ++ T T ++A V G S + + + ++
Sbjct: 552 RHKEK-SSLDTVRSPGVILSSDQTENTQEIMETPQAAALAGLKVTAGNSNVVSVEMGASS 610
Query: 388 TVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTELHQQLIQ 531
T S T T+N A + V+ ET T QTV +T + + ++
Sbjct: 611 TTSGTAHQTENAAETPVKPSVIAPETPVRTSEQTVIAPETPVVSEQVE 658
>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 809
Score = 30.3 bits (65), Expect = 1.4
Identities = 27/108 (25%), Positives = 48/108 (44%)
Frame = +1
Query: 208 RYYEKCSSIDR*KGRLLIGTAKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVAN 387
R+ EK SS+D + +I ++ T T ++A V G S + + + ++
Sbjct: 552 RHKEK-SSLDTVRSPGVILSSDQTENTQEIMETPQAAALAGLKVTAGNSNVVSVEMGASS 610
Query: 388 TVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTELHQQLIQ 531
T S T T+N A + V+ ET T QTV +T + + ++
Sbjct: 611 TTSGTAHQTENAAETPVKPSVIAPETPVRTSEQTVIAPETPVVSEQVE 658
>At4g21020.1 68417.m03041 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to SP|P23283 Desiccation-related
protein {Craterostigma plantagineum}; contains Pfam
profile PF02987: Late embryogenesis abundant protein
Length = 266
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/68 (27%), Positives = 24/68 (35%)
Frame = +1
Query: 301 TVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTV 480
T + K A EK AK+ + T D A A +K E AKD
Sbjct: 99 TKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTKEKAKDYA 158
Query: 481 AQTVDKTK 504
T+D K
Sbjct: 159 EDTMDNAK 166
>At2g36640.1 68415.m04494 late embryogenesis abundant protein
(ECP63) / LEA protein nearly identical to to LEA protein
in group 3 [Arabidopsis thaliana] GI:1526424; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 448
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/88 (20%), Positives = 34/88 (38%)
Frame = +1
Query: 268 AKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKG 447
AKD A D T A+ + S +G KD+ T + A K
Sbjct: 230 AKDKTAEKTGEYKDYTVEKATEGKDVTVSKLGELKDSAVETAKRAMGFLSGKTEEAKGKA 289
Query: 448 TSLIETAKDTVAQTVDKTKTELHQQLIQ 531
+TAK+ + + + T+ ++ + ++
Sbjct: 290 VETKDTAKENMEKAGEVTRQKMEEMRLE 317
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = +1
Query: 268 AKDTVATTLNTTVDATKSVASSAVEKGT----SLIGTAKDTVANTVSTTVDTTKNVAASA 435
A+D V + ++TK A A EK + + AK+T T + A
Sbjct: 69 ARDAVVGKTHEAAESTKEGAQIASEKAVGAKDATVEKAKETADYTAEKVGEYKDYTVDKA 128
Query: 436 VEKGTSLIETAKDTVAQTVDK 498
E + E AK+T T DK
Sbjct: 129 KEAKDTTAEKAKETANYTADK 149
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/77 (28%), Positives = 30/77 (38%)
Frame = +1
Query: 274 DTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTS 453
D +TT + K A+ +K AKD A + D + A A +K
Sbjct: 126 DKAKEAKDTTAEKAKETANYTADKAVE----AKDKTAEKIGEYKDYAVDKAVEAKDKTA- 180
Query: 454 LIETAKDTVAQTVDKTK 504
E AK+T T DK K
Sbjct: 181 --EKAKETANYTADKAK 195
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Frame = +1
Query: 268 AKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKG 447
AKD T D T + AKDT A T + T + A A +K
Sbjct: 98 AKDATVEKAKETADYTAEKVGEYKDYTVDKAKEAKDTTAEKAKETANYTADKAVEAKDKT 157
Query: 448 TSLIETAKD-TVAQTVD-KTKT 507
I KD V + V+ K KT
Sbjct: 158 AEKIGEYKDYAVDKAVEAKDKT 179
>At5g43870.1 68418.m05363 expressed protein
Length = 453
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = +2
Query: 26 VAASAIEKGTTAIGSAKETVANTVSTTVDATKNVAAAVVEKGSTIVGTAKDTLANTVHTT 205
VAA A + + E VA S A VAA VE + I+G ++ LA+ V +
Sbjct: 203 VAAIAAATASQSSSGTDEQVAKNDSAVASAATLVAAKCVE-AAEIMGADREHLASVVSSA 261
Query: 206 VDT-------TKNVAASTVEKGA 253
V+ T AA+T +GA
Sbjct: 262 VNVRSAGDIMTLTAAAATALRGA 284
>At2g29605.1 68415.m03595 hypothetical protein
Length = 401
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 391 VSTTVDTTKNVAASAVEKGTSLIET 465
VS T+DT KN+ A+ + K SL ET
Sbjct: 18 VSETIDTIKNIIATCIRKYMSLEET 42
>At5g15690.1 68418.m01835 hypothetical protein very low similarity
to MtN20 [Medicago truncatula] GI:2598591
Length = 169
Score = 28.3 bits (60), Expect = 5.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 453 RCAFLNCRSCYVFCCVYC 400
+ +F +CR C CC+YC
Sbjct: 138 KVSFEDCRGCCCDCCIYC 155
>At5g08660.1 68418.m01031 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 649
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 247 GRLLIGTAKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVA 426
G+ +G AKD + T ++ D + +S V + +G VANT+ + + ++++
Sbjct: 112 GKAGLGRAKDVLDTLGSSMTDLSSGGFTSGVATKGNELGILAFEVANTIVKSSNLIESLS 171
Query: 427 ASAVE--KGTSLI-ETAKDTVAQTVDK 498
+E KGT L E ++ V+ D+
Sbjct: 172 KRNIEHLKGTILYSEGVQNLVSNDFDE 198
>At3g10730.1 68416.m01292 sad1/unc-84-like 2 family protein contains
1 transmembrane domain; similar to Sad1 unc-84 domain
protein 2 (GI:6538749) [Homo sapiens]; similar to
Sad1/unc-84-like protein 2 (Fragment)
(Swiss-Prot:Q9UH99) [Homo sapiens]
Length = 455
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 319 SVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDK 498
S++SS T ++ + ++ + V V TT + VE +++ + QT+D
Sbjct: 137 SLSSSNFPIETEMVLSELESRISAVDGLVKTTTKMMQVQVEFLDKKMDSESRALRQTIDS 196
Query: 499 TKTELHQQL 525
T + LH +L
Sbjct: 197 TSSVLHSEL 205
>At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 535
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 32 ASAIEKGTTAIGSAKETVANTVSTTVDATKNVAAAVVEKGSTIVGTAKDTLANTVHTT 205
+S+ + A SA+ETV ++ ST T ++ S V T+ + +ANT T
Sbjct: 115 SSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQT 172
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 27.5 bits (58), Expect = 9.8
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +1
Query: 211 YYEKCSSIDR*KGRLLIGTAKDTVATTLNTTVD------ATKSVASS----AVEKGTSLI 360
YY C S+ + D+ A +T +D A+ SVA S AVE T++
Sbjct: 419 YYTACESMADDTASDSVAERDDSDAVEDDTAIDSMADDPASDSVAESDDGDAVENDTAID 478
Query: 361 GTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTV 480
A DTV+N+++ + D +A++ + +TA D V
Sbjct: 479 SMADDTVSNSMAESDDGDNVEDDTAID--SMCDDTANDDV 516
>At5g07020.1 68418.m00795 proline-rich family protein
Length = 235
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 271 KDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGT 450
KDT T +++ VA SA+ GT+ G++ D NT + +A AV +
Sbjct: 90 KDTAGQTNVYSIEPAVYVAESAISSGTA--GSSADGAENTAAIVA----GIALIAVAAAS 143
Query: 451 S-LIETAKD 474
S L++ KD
Sbjct: 144 SILLQVGKD 152
>At1g72100.1 68414.m08334 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to embryogenic gene [Betula
pendula] GI:4539485; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 480
Score = 27.5 bits (58), Expect = 9.8
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Frame = +1
Query: 193 RSHHCRYYEK-CSSIDR*KGRL--LIGTAKDTVATTLNTTVDATKSVASSAVEKGTSLIG 363
R HH E C + + + ++ ++G AKD TVD+ AS E
Sbjct: 117 RDHHATAGEVICDAFGKCRQKIASVVGRAKDR-------TVDSVGETASDVREAAAHKAH 169
Query: 364 TAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTK 504
K+TV + DT + A A + T K+ VA K
Sbjct: 170 DVKETVTHAARDVEDTVADQAQYAKGRVTEKAHDPKEGVAHKAHDAK 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,715,314
Number of Sequences: 28952
Number of extensions: 199757
Number of successful extensions: 801
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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