Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0026
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.1  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   6.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 405 LNSDKGLFQSVERARVQHLLLNLGGVRAP 319
           L+  K + Q V R +  H  LN+  VR+P
Sbjct: 335 LDEKKYILQEVVRVKKPHYELNMVEVRSP 363


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/43 (20%), Positives = 17/43 (39%)
 Frame = +2

Query: 56  TVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAE 184
           T+S  CK        +  H+ V F +++   ++    G    E
Sbjct: 31  TISQGCKACGYHSPLESNHKLVTFILKNPPNLNPAVQGSSLTE 73


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 465 PRHRSPINSIYTRARTKPNPLS 530
           P H+ P N + T      NPLS
Sbjct: 741 PHHQPPRNPVGTNPHDINNPLS 762


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 465 PRHRSPINSIYTRARTKPNPLS 530
           P H+ P N + T      NPLS
Sbjct: 633 PHHQPPRNPVGTNPHDINNPLS 654


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,814
Number of Sequences: 336
Number of extensions: 2699
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)