Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0026
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 62 8e-11
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 34 0.019
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 29 0.42
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 29 0.73
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 29 0.73
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.3
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 2.2
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 3.0
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 5.2
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 25 6.8
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 6.8
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 9.0
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 61.7 bits (143), Expect = 8e-11
Identities = 27/57 (47%), Positives = 38/57 (66%)
Frame = +1
Query: 295 KQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 465
+ K+ +SW PD A +K KM+YSSS D L+++ G+ IQATD SE + E V EK+
Sbjct: 78 RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKV 134
Score = 50.0 bits (114), Expect = 3e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Frame = +2
Query: 47 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 226
SGV VS C ++E+K K RYVVF + D K V + +++ FL DL +
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60
Query: 227 ECRYGLFDFD 256
+CRY ++DF+
Sbjct: 61 DCRYAIYDFE 70
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 33.9 bits (74), Expect = 0.019
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1
Query: 289 SKKQKLFLMSWCPDTAKVKKKMLYSSS 369
SKK L L+S+ P+ A V++KMLY+SS
Sbjct: 76 SKKNLLQLISYVPENANVRRKMLYASS 102
Score = 33.1 bits (72), Expect = 0.034
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +1
Query: 301 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 465
K+ + CP A VK +M+YSSS D++K L + + I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEILHAA 303
Query: 466 RATDRQ*TAFTHELGRNRTRSP 531
+ Q T + G +R R P
Sbjct: 304 GISSPQAETSTTKTGFSRPRPP 325
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 29.5 bits (63), Expect = 0.42
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 277 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 456
T++ LF++ W P M+Y+S+ + + V K +A D + + EAV+
Sbjct: 79 TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137
Query: 457 EKL 465
E L
Sbjct: 138 EFL 140
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 0.73
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 534 CRRAGSVSSELVCKCCLLAIG 472
C R G +SS +CK C+L G
Sbjct: 287 CERCGFISSNRICKACMLLEG 307
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 28.7 bits (61), Expect = 0.73
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 470 PPIANKQHLHTSSDETEPALRHSCPDDTRPRHH 568
PP++ K + S EP +RHS RP+ H
Sbjct: 37 PPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFH 69
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/80 (26%), Positives = 32/80 (40%)
Frame = +1
Query: 277 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 456
T A+K + P T K + ++ A KK + G +KY + S + E
Sbjct: 130 TGRATKSNAGVMDVQSPSTMSTSKNNVRNAERPASKKPVFGSKKYFDVINDSNVENKE-E 188
Query: 457 EKLRATDRQ*TAFTHELGRN 516
K R DR + FT +N
Sbjct: 189 TKDRNLDRALSKFTQSREKN 208
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 367 SFDALKKSLVGVQKYIQATDLSEASQ 444
S +AL++ L G + Y+Q+TD++ S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = -1
Query: 332 VSGHHDIRKSFCFLLASDVPW----HWCVYQSQTGHIC-IPR-YRP 213
+ G ++ C L AS W HWC + ++TG +C PR Y P
Sbjct: 1761 IPGVIELSNHLC-LTASSTEWSLIKHWCNFFTETGPLCDFPRAYYP 1805
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 462 APRHRSPINSIYTRARTKPNPLSDTP 539
APR R P ++ T A +P P+S P
Sbjct: 24 APRKREPARTVSTPAFMEPAPVSKKP 49
>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 518 RFRPSSCVNAVYWRSVARSFSSTAS*DASE--RSVAWMYF*TPTRDFFR 378
R++PS V V + S+ FSS+ + E R+++W + + + FR
Sbjct: 254 RYKPSCAVTDVLYLSIKGLFSSSTCLELYELIRNISWNFIGVESFNSFR 302
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 305 SFCF-LLASDVPWHWCVYQSQTGHICIPRYR 216
+ CF LLA + + YQ Q GHI PR++
Sbjct: 28 TICFALLAVCIAYDQISYQMQKGHIPGPRFK 58
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 56 TVSDACKTTYEEIKKDKKHRYV 121
TV D C + IK KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 53 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 157
VT D KT + +K KH+ V YIR K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,394
Number of Sequences: 5004
Number of extensions: 43953
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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