Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0025
         (664 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4HFL7 Cluster: Putative uncharacterized protein; n=3; ...    36   0.87 
UniRef50_A3EXG5 Cluster: Replicase polyprotein 1ab (pp1ab) (ORF1...    33   4.6  
UniRef50_Q4N0E2 Cluster: DNA polymerase alpha, putative; n=3; Th...    33   6.1  
UniRef50_O16286 Cluster: Putative uncharacterized protein W07B8....    33   6.1  
UniRef50_A2WNG5 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  

>UniRef50_A4HFL7 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania braziliensis
          Length = 592

 Score = 35.9 bits (79), Expect = 0.87
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 445 LQHWTRAVPLPPMSVEVRPTHSTPYILRVLLS 540
           + HW++AVP PP+  E+ P++   ++  +LLS
Sbjct: 253 MNHWSKAVPNPPLPAELLPSYRIDFVFLMLLS 284


>UniRef50_A3EXG5 Cluster: Replicase polyprotein 1ab (pp1ab) (ORF1ab
            polyprotein) [Includes: Replicase polyprotein 1a (pp1a)
            (ORF1A)] [Contains: Non-structural protein 1 (nsp1)
            (Leader protein); Non-structural protein 2 (nsp2) (p65
            homolog); Non-structural protein 3 (EC 3.4.22.-) (nsp3)
            (Papain- like proteinase) (PL-PRO) (PL2-PRO);
            Non-structural protein 4 (nsp4); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3CLp) (nsp5); Non- structural
            protein 6 (nsp6); Non-structural protein 7 (nsp7); Non-
            structural protein 8 (nsp8); Non-structural protein 9
            (nsp9); Non- structural protein 10 (nsp10) (Growth
            factor-like peptide) (GFL); RNA- directed RNA polymerase
            (EC 2.7.7.48) (RdRp) (Pol) (nsp12); Helicase (Hel)
            (nsp13); Exoribonuclease (EC 3.1.13.-) (ExoN) (nsp14);
            Uridylate-specific endoribonuclease (EC 3.1.-.-) (NendoU)
            (nsp15); Putative 2'-O-methyl transferase (EC 2.1.1.-)
            (nsp16)]; n=4; Bat coronavirus HKU9|Rep: Replicase
            polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Non-structural protein 1 (nsp1) (Leader protein);
            Non-structural protein 2 (nsp2) (p65 homolog);
            Non-structural protein 3 (EC 3.4.22.-) (nsp3) (Papain-
            like proteinase) (PL-PRO) (PL2-PRO); Non-structural
            protein 4 (nsp4); 3C-like proteinase (EC 3.4.22.-)
            (3CL-PRO) (3CLp) (nsp5); Non- structural protein 6
            (nsp6); Non-structural protein 7 (nsp7); Non- structural
            protein 8 (nsp8); Non-structural protein 9 (nsp9); Non-
            structural protein 10 (nsp10) (Growth factor-like
            peptide) (GFL); RNA- directed RNA polymerase (EC
            2.7.7.48) (RdRp) (Pol) (nsp12); Helicase (Hel) (nsp13);
            Exoribonuclease (EC 3.1.13.-) (ExoN) (nsp14);
            Uridylate-specific endoribonuclease (EC 3.1.-.-) (NendoU)
            (nsp15); Putative 2'-O-methyl transferase (EC 2.1.1.-)
            (nsp16)] - Bat coronavirus HKU9 (BtCoV) (BtCoV/HKU9)
          Length = 6930

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 171  IAFIYYCYKNTLNWRYACSLNVIWYLCWK 85
            IAF++ CYK  L+ RY C+ NV   +C+K
Sbjct: 2231 IAFLWLCYKGFLHVRYGCN-NVACLMCYK 2258


>UniRef50_Q4N0E2 Cluster: DNA polymerase alpha, putative; n=3;
            Theileria|Rep: DNA polymerase alpha, putative - Theileria
            parva
          Length = 1451

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
 Frame = +3

Query: 360  LL*TWIDQLLYMLT--KPYC-RVCG-CSVSLAPAAL---DACRPSPTYVSRSAPDSLHSL 518
            LL  W+D+LLY LT    +C RVC  C+V+     L   D C P PT  S    DS+ ++
Sbjct: 1241 LLRNWVDRLLYELTVQSSFCIRVCNICNVTTLNVTLGDVDRC-PQPTCQSN---DSMQTI 1296

Query: 519  YTKS 530
            +T +
Sbjct: 1297 FTSN 1300


>UniRef50_O16286 Cluster: Putative uncharacterized protein W07B8.3;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein W07B8.3 - Caenorhabditis elegans
          Length = 254

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 25/80 (31%), Positives = 34/80 (42%)
 Frame = +1

Query: 376 SINCYICLLSHTAEYADALSRSHLQHWTRAVPLPPMSVEVRPTHSTPYILRVLLSVIRSL 555
           S N Y      + + A    R H Q  TRA+  PPMS     THS P  LR +   +++ 
Sbjct: 115 SYNMYPQRSPSSMDSAPDTYRHHPQQMTRAMSPPPMSTTTGSTHSPP--LRQIGETVKTT 172

Query: 556 PENYHSYQ*KCNTTYQRYEY 615
             +  SY       Y+ Y Y
Sbjct: 173 YSHSGSYGGLYPGGYKGYPY 192


>UniRef50_A2WNG5 Cluster: Putative uncharacterized protein; n=1; Oryza
            sativa (indica cultivar-group)|Rep: Putative
            uncharacterized protein - Oryza sativa subsp. indica
            (Rice)
          Length = 1164

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 449  STGRVPSLSHLCQSKCARLTPLPIY*ECYYL 541
            + G  P LSHLC S+C +LT LP      YL
Sbjct: 946  NNGDFPRLSHLCISRCPKLTNLPPLISLLYL 976


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,066,057
Number of Sequences: 1657284
Number of extensions: 11644690
Number of successful extensions: 28787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28781
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)