Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0025
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1218 + 9846644-9847837                                           33   0.27 
04_04_0323 - 24392043-24393021,24393135-24393544                       31   0.82 
07_03_0858 + 22048362-22049513,22049674-22049740,22050404-220504...    30   1.4  
01_06_0770 - 31844132-31844749                                         29   2.5  
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053...    29   4.4  
03_05_0201 + 21924279-21925205,21925700-21926320                       28   5.8  

>01_01_1218 + 9846644-9847837
          Length = 397

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 449 STGRVPSLSHLCQSKCARLTPLPIY*ECYYL 541
           + G  P LSHLC S+C +LT LP      YL
Sbjct: 320 NNGDFPRLSHLCISRCPKLTNLPPLISLLYL 350


>04_04_0323 - 24392043-24393021,24393135-24393544
          Length = 462

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +3

Query: 426 CSVSLAPAALDACRPSPTYVSRSAPDSLHSLYTKSVTICDQIAAG 560
           CSV     A  A  PSPT  SR+A  S  S  + + T     AAG
Sbjct: 230 CSVGATKPAASADSPSPTSTSRTASASSSSSSSTATTASSSTAAG 274


>07_03_0858 +
           22048362-22049513,22049674-22049740,22050404-22050476,
           22050606-22050642,22050877-22050957
          Length = 469

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 132 WRYACSLNVIWYLCWKTKLLIFLQKGTAASHEPPVVPNTW 13
           WR+    N+ W L W  KLLI L   T       +VP +W
Sbjct: 246 WRFHVHGNICWLLDWANKLLI-LDTTTNQLSTIEMVPGSW 284


>01_06_0770 - 31844132-31844749
          Length = 205

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = -1

Query: 520 YREWSESGALRLT*VGEGRHASSAAG---ASETEHPHTLQYGLVSIYSN*SIQVYNSTYY 350
           +R W+  GALR   VG GR  +   G    +   H H    G V  + N S     S  Y
Sbjct: 134 HRYWTAGGALRNVPVGAGRRKNRPLGPLAVAHHNHHHRAAAGFVLGFPNPSSPTSPSPVY 193

Query: 349 T 347
           T
Sbjct: 194 T 194


>02_05_0331 +
           28003454-28003912,28004649-28004873,28005017-28005370,
           28005673-28005702,28006869-28007342
          Length = 513

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +1

Query: 391 ICLLSHTAEYADALSRSHLQ--HWTRAVPLPPMSVEVRPTHSTPYILRVL-LSVIRSLPE 561
           I ++S    +   +S   +Q  H  R    PP S     T+ T YIL  L LS  RSL +
Sbjct: 209 IFIMSTAVAFCWEISHHFVQVVHTRRCSFAPPQSTAAAETNPTEYILETLELSDPRSLMQ 268

Query: 562 NYHSYQ*KC 588
            Y +YQ  C
Sbjct: 269 -YLAYQDLC 276


>03_05_0201 + 21924279-21925205,21925700-21926320
          Length = 515

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 377 RSIAIYAY*AILQSMRMLCLARTCSTGRVPSLSHLCQSKCARL 505
           R I    Y  + + +R +C+    S  RV SL H+ + + ARL
Sbjct: 126 RDILFSPYGDLWRQLRRICVLELFSARRVQSLRHVREDEAARL 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,214,866
Number of Sequences: 37544
Number of extensions: 325958
Number of successful extensions: 784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)