Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0025
         (664 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF117754-1|AAD22032.1| 2174|Homo sapiens thyroid hormone recepto...    30   6.4  
AB011165-1|BAA25519.2| 2005|Homo sapiens KIAA0593 protein protein.     30   6.4  

>AF117754-1|AAD22032.1| 2174|Homo sapiens thyroid hormone
            receptor-associated protein complex component TRAP240
            protein.
          Length = 2174

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 381  QLLYMLTKPYCRVCGCSVSLAPAALDAC----RPSPTYVSRSAPDSLHSLYTKSVTI 539
            Q L    K  CR+CG S + +P+ L AC     P  ++V      S  S++ +S T+
Sbjct: 1886 QSLSKRLKDMCRMCGISAADSPSILSACLVAMEPQGSFVIMPDSVSTGSVFGRSTTL 1942


>AB011165-1|BAA25519.2| 2005|Homo sapiens KIAA0593 protein protein.
          Length = 2005

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 381  QLLYMLTKPYCRVCGCSVSLAPAALDAC----RPSPTYVSRSAPDSLHSLYTKSVTI 539
            Q L    K  CR+CG S + +P+ L AC     P  ++V      S  S++ +S T+
Sbjct: 1717 QSLSKRLKDMCRMCGISAADSPSILSACLVAMEPQGSFVIMPDSVSTGSVFGRSTTL 1773


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,213,007
Number of Sequences: 237096
Number of extensions: 1835222
Number of successful extensions: 3722
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3722
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)