Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0025
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016426-1|AAB65347.2| 254|Caenorhabditis elegans Hypothetical ... 33 0.18
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 3.9
AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical ... 29 3.9
Z70311-2|CAA94374.1| 366|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p... 28 5.1
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr... 28 5.1
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 28 5.1
AL034365-4|CAA22262.1| 375|Caenorhabditis elegans Hypothetical ... 28 5.1
Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical p... 27 9.0
Z73422-11|CAA97768.1| 423|Caenorhabditis elegans Hypothetical p... 27 9.0
Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical p... 27 9.0
Z66495-11|CAK12849.1| 502|Caenorhabditis elegans Hypothetical p... 27 9.0
Z66495-2|CAA91267.2| 502|Caenorhabditis elegans Hypothetical pr... 27 9.0
>AF016426-1|AAB65347.2| 254|Caenorhabditis elegans Hypothetical
protein W07B8.3 protein.
Length = 254
Score = 33.1 bits (72), Expect = 0.18
Identities = 25/80 (31%), Positives = 34/80 (42%)
Frame = +1
Query: 376 SINCYICLLSHTAEYADALSRSHLQHWTRAVPLPPMSVEVRPTHSTPYILRVLLSVIRSL 555
S N Y + + A R H Q TRA+ PPMS THS P LR + +++
Sbjct: 115 SYNMYPQRSPSSMDSAPDTYRHHPQQMTRAMSPPPMSTTTGSTHSPP--LRQIGETVKTT 172
Query: 556 PENYHSYQ*KCNTTYQRYEY 615
+ SY Y+ Y Y
Sbjct: 173 YSHSGSYGGLYPGGYKGYPY 192
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 189 CGPNSLFVNFRCYDTISVIQYC 254
C PN + +N +CY+T+S+ C
Sbjct: 445 CQPNQVLINNQCYNTVSIGFQC 466
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 189 CGPNSLFVNFRCYDTISVIQYCMIT 263
C N ++ N +CY+T+ + C IT
Sbjct: 563 CNSNQVYYNNQCYNTVPIGSQCQIT 587
>AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical
protein C46C11.1 protein.
Length = 943
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 388 YICLLSHTAEYADALSRSH---LQHWTRAVPLPPMSVEVRPTHSTPY 519
Y+ L H Y S+SH L+ W++A+ P +SVE P+
Sbjct: 378 YLVLHCHGGGYVATSSKSHETYLRQWSKALNCPVVSVEYSLAPENPF 424
>Z70311-2|CAA94374.1| 366|Caenorhabditis elegans Hypothetical
protein T25B9.2 protein.
Length = 366
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 56 PFCKNINNFVFQQRYQITLRLHAYRQFSVF 145
PFC INN + I+ L ++ QFSVF
Sbjct: 188 PFCAVINNTIMCMHGGISEHLTSFNQFSVF 217
>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
protein AH6.1 protein.
Length = 1137
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 554 CRKIIIHISKSVILPIKDMSISYCH*TNPINLQLIKN 664
C +I+ ++ K + PI+ I+ H NP + L+K+
Sbjct: 768 CEEIVYNVKKGGLFPIRPEIITDIHDVNPALIALVKD 804
>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
protein AH6.1 protein.
Length = 1137
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 554 CRKIIIHISKSVILPIKDMSISYCH*TNPINLQLIKN 664
C +I+ ++ K + PI+ I+ H NP + L+K+
Sbjct: 768 CEEIVYNVKKGGLFPIRPEIITDIHDVNPALIALVKD 804
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 189 CGPNSLFVNFRCYDTISVIQYCMIT 263
C N ++ N +CY+T+++ C IT
Sbjct: 299 CNSNQVYYNGQCYNTVNIGFQCQIT 323
>AL034365-4|CAA22262.1| 375|Caenorhabditis elegans Hypothetical
protein Y69E1A.4 protein.
Length = 375
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 56 PFCKNINNFVFQQRYQITLRLHAYRQFSVF 145
PFC INN + I+ L ++ QFSVF
Sbjct: 220 PFCAVINNTIMCMHGGISEHLTSFNQFSVF 249
>Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 233 NFCDSILYDYLQLLQIVIEPFPEP 304
NF +I+ DY++ + I+I P P P
Sbjct: 493 NFPKTIVSDYVESISIIIPPIPPP 516
>Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 233 NFCDSILYDYLQLLQIVIEPFPEP 304
NF +I+ DY++ + I+I P P P
Sbjct: 493 NFPKTIVSDYVESISIIIPPIPPP 516
>Z73422-11|CAA97768.1| 423|Caenorhabditis elegans Hypothetical
protein B0564.6b protein.
Length = 423
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 233 NFCDSILYDYLQLLQIVIEPFPEP 304
NF +I+ DY++ + I+I P P P
Sbjct: 391 NFPKTIVSDYVESISIIIPPIPPP 414
>Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.6a protein.
Length = 525
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 233 NFCDSILYDYLQLLQIVIEPFPEP 304
NF +I+ DY++ + I+I P P P
Sbjct: 493 NFPKTIVSDYVESISIIIPPIPPP 516
>Z66495-11|CAK12849.1| 502|Caenorhabditis elegans Hypothetical
protein C36A4.3 protein.
Length = 502
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 288 SITICSNCK*SYNIESQKLYHNI*SLQTASSDRTSQLHYIAFIYYCYKNTL 136
++T CS Y QKLY I + +H + ++ Y YK TL
Sbjct: 319 AMTYCSYLLSKYPNVQQKLYEEIMEAKENGGLTYDSIHNMKYLDYVYKETL 369
>Z66495-2|CAA91267.2| 502|Caenorhabditis elegans Hypothetical
protein C36A4.2 protein.
Length = 502
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 288 SITICSNCK*SYNIESQKLYHNI*SLQTASSDRTSQLHYIAFIYYCYKNTL 136
++T CS Y QKLY I + +H + ++ Y YK TL
Sbjct: 319 AMTYCSYLLSKYPNVQQKLYEEIMEAKENGGLTYDSIHNMKYLDYVYKETL 369
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,810,985
Number of Sequences: 27780
Number of extensions: 291675
Number of successful extensions: 792
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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