Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0024
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891           28   8.8  
04_04_0419 + 25086456-25086768,25087302-25087369,25087458-250876...    28   8.8  
02_04_0012 - 18891917-18893091,18893209-18893323,18893425-188934...    28   8.8  

>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
          Length = 1274

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 233  IIDFVFHCSHKTLLNDILD 289
            ++D+V HC H+  LND +D
Sbjct: 1157 LVDWVLHCWHQGFLNDAVD 1175


>04_04_0419 +
           25086456-25086768,25087302-25087369,25087458-25087681,
           25087929-25088012,25088593-25088806,25089252-25089428,
           25089526-25089645,25089865-25089991,25090104-25090130,
           25090526-25091007
          Length = 611

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 148 VFYYRLNGWTSSRPTGVKWLPE 83
           +F Y+ NGW +   TG+++LP+
Sbjct: 564 LFCYKANGWNAWLVTGIQFLPQ 585


>02_04_0012 -
           18891917-18893091,18893209-18893323,18893425-18893477,
           18893553-18893813,18896451-18896501,18896629-18896877,
           18897046-18897268,18897371-18897487
          Length = 747

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 177 IIKAGNVTFGQLLVNQKNELLTLYSIAVTKLF*TTS*INNRLSI 308
           ++   N   GQ+ + + N L+ + S+A+T  F TT+ I N   I
Sbjct: 400 VVHTSNKYEGQVYIPEVNFLIGVASVAITVAFQTTANIGNAYGI 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,649,350
Number of Sequences: 37544
Number of extensions: 334015
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)