Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0024
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27420.1 68414.m03342 kelch repeat-containing F-box family pr...    28   5.6  
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi...    27   9.7  

>At1g27420.1 68414.m03342 kelch repeat-containing F-box family
           protein similar to MIPP proteins (gi|2191178,
           sp|P28575); contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 346

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 146 DSLNNSI*GDYYQSRQCDFWTIIGKSEKRIIDFVFHCSHKTLLNDILDK 292
           D   NS    +   R+  FW  +G    +++ F   C H+TL+ D LDK
Sbjct: 273 DPEENSWSSVFVPPREGGFWVRLGVWNNKVLLFSRVCGHETLMYD-LDK 320


>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 452

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 304 LNLLFI*DVVQKSFVTAMEYKVNNSF 227
           LN+L I    Q+ FV AME K+N +F
Sbjct: 317 LNVLLIRLYAQEDFVEAMESKINEAF 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,534,730
Number of Sequences: 28952
Number of extensions: 282567
Number of successful extensions: 433
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)