Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0022
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.7  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   9.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 155 LINKRLHLRKMSFFFCF*YTFS--LTCVVCS 241
           L+ K  +LR++ +F+C   TF+  L  ++CS
Sbjct: 46  LVFKCYNLRRIYYFYCVSITFNVHLLFLLCS 76


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 85  HENNYIDFILNFLIIVCRAV 144
           H N+Y+D   N +I++C  V
Sbjct: 248 HCNSYVDGGRNEIILLCEKV 267


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 185 MSFFFCF*YTFSLTCVVCSKRSL*RSELHQYSRRLINL*FYVR 313
           +  +F F YT+ L  +VC  R   R+     + +L N  F+ +
Sbjct: 150 VQLYFQFYYTYFLCVIVCIFRGKYRNINLLLTEQLQNRRFFAK 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,623
Number of Sequences: 336
Number of extensions: 3028
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)