Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0021
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28012| Best HMM Match : RNA_pol_Rpa43 (HMM E-Value=7.1e-08)         56   2e-08
SB_11460| Best HMM Match : Pkinase (HMM E-Value=0)                     28   5.2  

>SB_28012| Best HMM Match : RNA_pol_Rpa43 (HMM E-Value=7.1e-08)
          Length = 242

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 28/71 (39%), Positives = 37/71 (52%)
 Frame = +3

Query: 255 YKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFN 434
           Y    +LQ  G I +++  +HF  Q DY  F+P IG KL G+VNK    H+  LVH  FN
Sbjct: 70  YDKVTLLQRRGNIIDESPFLHFDAQVDYITFKPEIGNKLIGVVNKFGYDHIGCLVHGCFN 129

Query: 435 VVIPQPTEEPG 467
             I +     G
Sbjct: 130 ASIAKSRTSNG 140


>SB_11460| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 323

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 362 TYVWLKYEVIRLNLEMYIRIIIAYSANILKYTR 264
           TYV    EVI  N  MYI   +A + ++L+Y R
Sbjct: 110 TYVTTLLEVIETNTRMYIITDLAENGDLLEYIR 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,558,083
Number of Sequences: 59808
Number of extensions: 314191
Number of successful extensions: 591
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)