Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0020
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    94   2e-20
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    29   0.57 
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    28   1.0  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   1.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   3.1  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   4.0  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    26   5.3  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   7.1  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   7.1  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   9.3  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    25   9.3  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 41/74 (55%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
 Frame = +1

Query: 256 LSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR- 432
           LSP S  R SIE+G Y FHYLI+N ICYL +CE++Y ++LAF+YLEE+A EF+  +G   
Sbjct: 36  LSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFWNSFGEEA 95

Query: 433 LNTVTRPYTFIEFD 474
           L    RPY F++FD
Sbjct: 96  LQPGLRPYAFVQFD 109


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 340 LVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNTVTRP 453
           +V+   NY + +   YLE +  +F+  Y  R  +VT P
Sbjct: 165 MVIVNNNYLREVDMPYLESVESKFYVSYNAREISVTLP 202


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 307 FHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRL 435
           FHY+ E HIC++      YS   AF+  + +A+E    +G R+
Sbjct: 437 FHYIPEKHICFVTFI--TYSAANAFH--DYLAEEEVLLHGRRI 475


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 642 LRRSPSPASTSC*DTWRPSGTSATSSIGFCVFVSSSDSIAPLCSTR 505
           + RSPSP  +    T RPS   + SS+     V  SD ++P  STR
Sbjct: 697 MSRSPSPMLSRRSSTLRPSFERSASSLS----VRQSDVVSPAPSTR 738


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -1

Query: 633 SPSPASTSC*DTWRPSGTSATSSIGFCVFVSSSDSIAPLCSTRRCSAS 490
           S SP+S+S   T  PS +S++SS       SSS S +   S+   S+S
Sbjct: 141 SSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +1

Query: 313 YLIENHI---CYLVLCERNYSK--RLAFNYLEEIAQEFFQQY 423
           YL++N +   C+  L      K   L++NYL EI  +FFQ +
Sbjct: 812 YLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNF 853


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 322 ENHICYLVLCERNYSKRLAFNYLEEIAQEFF 414
           E+H C L+L E + +K LA + L  + ++++
Sbjct: 495 ESHKCVLILTEGDSAKSLAVSGLSVVGRDYY 525


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 319 IENHICYLVLCERNYSKRLAFNY 387
           I+N      L E NYSKRL FN+
Sbjct: 289 IDNSKFINYLIEENYSKRLEFNF 311


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 328 DFQS-NNGRDTGRFQWNISSGTEGLIP 251
           DF+   +G D  + QWN S+  EGL P
Sbjct: 384 DFRGVGSGADLQKQQWNKSTSAEGLQP 410


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = -3

Query: 352 HTGP-NNICDFQSNNG--RDTGRF 290
           +TG  N+IC+FQS +G   +TGRF
Sbjct: 638 YTGDGNDICEFQSRSGFCVETGRF 661


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 382 NYLEEIAQEFFQQYGHRLNTVTRPYTF 462
           NY + +  E  +QY   +N+ TRP  F
Sbjct: 554 NYFKSLKAELNRQYAAAVNSGTRPLLF 580


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 140 SLTPYLKLKCLSLKHKIYVIEFNFNLRFFPSHSFENMKKT 21
           S+ PYL+++  S KH  Y+        F+ S   + +K T
Sbjct: 54  SVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKST 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,042
Number of Sequences: 5004
Number of extensions: 49618
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)