Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0020
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011 93 2e-19
03_06_0257 - 32697469-32697520,32698183-32698301,32698536-326985... 83 2e-16
08_02_0127 + 12840738-12840913,12841475-12841635,12842123-128422... 75 6e-14
06_01_0688 - 5022703-5022805,5023615-5023694,5024305-5024381,502... 42 6e-04
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 33 0.15
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 33 0.19
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 30 1.8
05_01_0474 - 3797926-3798609 29 3.2
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334 29 4.2
>01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011
Length = 199
Score = 92.7 bits (220), Expect = 2e-19
Identities = 37/66 (56%), Positives = 50/66 (75%)
Frame = +1
Query: 277 RCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNTVTRPY 456
R SIETGPYLFHY+IE +CYL +C+ +Y K+LAF YLE++ EF + G+++ T RPY
Sbjct: 52 RMSIETGPYLFHYIIEGRVCYLTMCDCSYPKKLAFQYLEDLKNEFERVNGNQIETAARPY 111
Query: 457 TFIEFD 474
FI+FD
Sbjct: 112 AFIKFD 117
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +2
Query: 128 MVLMTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFRN 256
MV +TMIARV D LPL + +D + + Y+ QAK+LF+N
Sbjct: 1 MVKLTMIARVTDDLPLVEGL-DDGRDLKDADFYKQQAKLLFKN 42
>03_06_0257 -
32697469-32697520,32698183-32698301,32698536-32698556,
32698903-32698979,32699331-32699477,32699561-32699721,
32700320-32700522
Length = 259
Score = 82.6 bits (195), Expect = 2e-16
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Frame = +1
Query: 277 RCSIETGPYLFHY-----LIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNT 441
R SIETGPY F Y +IE +CYL +C+R+Y K+LAF YLE++ EF + G ++ T
Sbjct: 52 RMSIETGPYFFQYPYVLYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGSQIET 111
Query: 442 VTRPYTFIEFD 474
RPY FI+FD
Sbjct: 112 AARPYAFIKFD 122
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +2
Query: 128 MVLMTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFRN 256
MV +TM+ARV DGLPLA + +D + + Y+ QAK+LF+N
Sbjct: 1 MVKLTMVARVTDGLPLAEGL-DDGRDQKDADFYKQQAKLLFKN 42
>08_02_0127 +
12840738-12840913,12841475-12841635,12842123-12842202,
12842435-12842550,12842570-12842705,12842738-12842872
Length = 267
Score = 74.5 bits (175), Expect = 6e-14
Identities = 32/65 (49%), Positives = 45/65 (69%)
Frame = +1
Query: 277 RCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNTVTRPY 456
R SIETGPY+ IE +CYL +C+ +Y K+LAF YLE++ EF + G+++ T RPY
Sbjct: 52 RMSIETGPYI----IEGRVCYLTMCDHSYPKKLAFQYLEDLKNEFERVNGNQIETAARPY 107
Query: 457 TFIEF 471
FI+F
Sbjct: 108 AFIKF 112
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +2
Query: 128 MVLMTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFRN 256
MV +TMIARV DGLPL + +D + + Y+ QAK+LF+N
Sbjct: 1 MVKLTMIARVTDGLPLVEGL-DDGRDLKDADFYKQQAKLLFKN 42
>06_01_0688 -
5022703-5022805,5023615-5023694,5024305-5024381,
5024670-5024816,5025654-5025876
Length = 209
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = +2
Query: 128 MVLMTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFRN 256
MV +TMIARV DGLPLA + +D + + Y+ QAK+LF+N
Sbjct: 1 MVKLTMIARVTDGLPLAEGL-DDGRDQKDADFYKQQAKLLFKN 42
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 268 SPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG 426
+P R S + F++L+ Y V+ + + K ++ +LE + +F ++YG
Sbjct: 68 APARFSYACDGHTFNFLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYG 120
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = +1
Query: 253 ELSPQSPMRCSIETGPYLFHYL------IENHICYLVLCERNYSKRLAFNYLEEIAQEFF 414
+L P + R Y+FH L + + +L + + +R+ F YLE+I F
Sbjct: 35 KLPPDAESRLCFAQDRYIFHVLRSPPPAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFI 94
Query: 415 QQYG 426
+ YG
Sbjct: 95 KNYG 98
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/54 (20%), Positives = 28/54 (51%)
Frame = +1
Query: 262 PQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQY 423
P S + + + F+YL+E+ Y V+ + +++ +L+ + +F ++Y
Sbjct: 40 PASNNKFTYNCDGHTFNYLVEDGFTYCVVAVESVGRQIPIAFLDRVKDDFTKRY 93
>05_01_0474 - 3797926-3798609
Length = 227
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 636 RSPSPASTSC*DTWRPSGTSATS-SIGFCVFVSSSDSIAPLCSTRRCSA 493
R SP STS +W S S+ S S F V +S ++A TR CSA
Sbjct: 120 RRTSPCSTSSSSSWSYSSPSSVSMSPVFTVHQASPMAVARSHHTRACSA 168
>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
Length = 197
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 301 YLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG 426
Y+FH + I L + + +R+ F +LE+I F + YG
Sbjct: 52 YVFHAKRTDGITALCMADEAAGRRIPFAFLEDIHGRFVKTYG 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,350,429
Number of Sequences: 37544
Number of extensions: 321359
Number of successful extensions: 759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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