Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0020
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   2e-20
SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)                94   1e-19
SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)                      39   0.003
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)              29   4.3  
SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        28   5.7  
SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)                  28   7.5  
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_3399| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  
SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)                          27   9.9  

>SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 39/74 (52%), Positives = 58/74 (78%)
 Frame = +1

Query: 253 ELSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR 432
           +L+  SP R SIE+G  +FHY++EN +C+L L ++ +SKR AF++LE+IA EF ++YGH+
Sbjct: 40  KLTNHSPARSSIESGNMMFHYILENSVCFLTLTDKPFSKRAAFSFLEDIASEFNREYGHQ 99

Query: 433 LNTVTRPYTFIEFD 474
           ++  TRPY FIEFD
Sbjct: 100 VSRATRPYPFIEFD 113



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/39 (58%), Positives = 32/39 (82%)
 Frame = +2

Query: 137 MTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFR 253
           MTMI R+ DGLPLAA+M  D++++  + +YQ+QAKMLFR
Sbjct: 1   MTMIGRLPDGLPLAASMPSDQETSQVLTQYQSQAKMLFR 39



 Score = 35.5 bits (78), Expect = 0.037
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 558 NLSMMSQKYRKDATYLNTKSMLVKVTA 638
           NL  +S+KY+KDATYLN +S   K  A
Sbjct: 209 NLRFVSEKYKKDATYLNLRSAYAKYAA 235


>SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 38/73 (52%), Positives = 57/73 (78%)
 Frame = +1

Query: 253 ELSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR 432
           +L+  SP R SIE+G  +FHY++EN +C+L L ++ +SKR AF++LE+IA EF ++YGH+
Sbjct: 40  KLTNHSPARSSIESGNMMFHYILENSVCFLTLTDKPFSKRAAFSFLEDIASEFNREYGHQ 99

Query: 433 LNTVTRPYTFIEF 471
           ++  TRPY FIEF
Sbjct: 100 VSRATRPYPFIEF 112



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/39 (58%), Positives = 32/39 (82%)
 Frame = +2

Query: 137 MTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFR 253
           MTMI R+ DGLPLAA+M  D++++  + +YQ+QAKMLFR
Sbjct: 1   MTMIGRLPDGLPLAASMPSDQETSQVLTQYQSQAKMLFR 39


>SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)
          Length = 295

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +1

Query: 253 ELSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEE 396
           E  P +  +C+  +G Y FH ++E+ + YL + ++ + K+  + +LEE
Sbjct: 135 EKIPGNDTKCTYVSGSYQFHVIVEDGLVYLCMADKEFGKKDPYAFLEE 182


>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 564  IGFCVFVSSSDSIAPLCSTRRCSAS*C 484
            +G+C+F+  S S +P+C     SAS C
Sbjct: 1770 LGYCLFLELSPSASPICHQYNLSASAC 1796


>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
          Length = 490

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 182 WQPKAARRRLLQS*SLTPYLKLKCLSLKHKIYVIEFNFNLRFFPSHSFENM 30
           W  K  +  L +S  LT  L+ K +  KH++ V+  + +   + + SFE +
Sbjct: 58  WDEKDTKNELAESSLLTKLLRDKLVVTKHEVEVLRSDPSSPLYSAKSFEEL 108


>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 573 TSSIGFCVFVSSSDSIAPLCS 511
           TSS+ FC F++  +S+  +CS
Sbjct: 678 TSSVSFCCFMNQGESVVTVCS 698


>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
          Length = 1552

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 560 VFASSCPVRTV*LPS---AALVDVLHHDALHVSNSMNVYGR 447
           VF+  CP RTV LPS   A LVD       H+ N M++  R
Sbjct: 39  VFSHICPERTVILPSSDEARLVDDAFIKICHMVNDMSMQVR 79


>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 379 FNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFD 474
           F  + +IAQ+     G+ +NT TRP   + FD
Sbjct: 360 FTPIPDIAQKQLTMLGNSMNTYTRPIQVLVFD 391


>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1900

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 597 WRPSGTSATSSIGFCVFVSSSDSIAPLCSTR 505
           WR   TSAT+ I    FV +  S+AP C  +
Sbjct: 291 WRIYFTSATNMIEVTAFVCALVSVAPTCECK 321


>SB_3399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 352 ERNYSKRLAFNYLEEIAQEFF--QQYGHRLNTV 444
           +R+YS+ + F+Y+E+ A      Q+  HRL T+
Sbjct: 111 DRHYSRHIDFSYMEQAADRVMKRQKIYHRLTTL 143


>SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)
          Length = 327

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = +1

Query: 280 CSIETGPYL--FHYLIENHICYLVLCERNYSKRLAFNYLEEIA-QEFFQQYGHRLNTVTR 450
           C   T P +  +H+ ++  I  + L E + S+   F+Y+E++A     + YG +++++  
Sbjct: 80  CDGNTHPNMNPYHFRLKYDIYQMFLPEGDLSEDSLFSYMEKMAYPNVIKTYGTKVSSLQA 139

Query: 451 P-YTFIEFD 474
           P    + FD
Sbjct: 140 PSLPLVSFD 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,888,266
Number of Sequences: 59808
Number of extensions: 369904
Number of successful extensions: 966
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)