Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0020
(645 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001364-1|AAH01364.1| 215|Homo sapiens SEC22B protein protein. 99 1e-20
BC007122-1|AAH07122.1| 307|Homo sapiens SEC22 vesicle trafficki... 69 1e-11
X92396-1|CAA63133.1| 220|Homo sapiens ORF protein. 50 5e-06
BC056141-1|AAH56141.1| 220|Homo sapiens synaptobrevin-like 1 pr... 50 5e-06
AK222794-1|BAD96514.1| 220|Homo sapiens synaptobrevin-like 1 va... 50 5e-06
AJ295938-1|CAC16891.1| 260|Homo sapiens synaptobrevin like prot... 50 5e-06
AJ271736-1|CAB96816.1| 220|Homo sapiens synaptobrevin-like 1 pr... 50 5e-06
BC018437-1|AAH18437.1| 250|Homo sapiens SEC22 vesicle trafficki... 38 0.031
BC006178-1|AAH06178.1| 303|Homo sapiens SEC22 vesicle trafficki... 38 0.031
AY359041-1|AAQ89400.1| 228|Homo sapiens SEC22C protein. 38 0.031
AF039568-1|AAD02171.1| 250|Homo sapiens vesicle trafficking pro... 38 0.031
U30883-1|AAA93073.1| 344|Homo sapiens SRp55-1 protein. 31 3.5
U30829-1|AAA93072.1| 335|Homo sapiens SRp55-3 protein. 31 3.5
U30828-1|AAA93071.1| 135|Homo sapiens SRp55-2 protein. 31 3.5
BC006832-1|AAH06832.1| 344|Homo sapiens splicing factor, argini... 31 3.5
AL031681-3|CAB43960.1| 344|Homo sapiens splicing factor, argini... 31 3.5
AB208976-1|BAD92213.1| 279|Homo sapiens arginine/serine-rich sp... 31 3.5
>BC001364-1|AAH01364.1| 215|Homo sapiens SEC22B protein protein.
Length = 215
Score = 99.1 bits (236), Expect = 1e-20
Identities = 41/74 (55%), Positives = 57/74 (77%)
Frame = +1
Query: 253 ELSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR 432
+L+ QSP RC++E G FHY+IE +CYLVLCE + K+LAF YLE++ EF +Q+G +
Sbjct: 43 KLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKK 102
Query: 433 LNTVTRPYTFIEFD 474
+ TV+RPY+FIEFD
Sbjct: 103 VPTVSRPYSFIEFD 116
Score = 68.1 bits (159), Expect = 2e-11
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = +2
Query: 128 MVLMTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFR 253
MVL+TMIARVADGLPLAA+MQEDEQS ++ +YQ+QAK LFR
Sbjct: 1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFR 42
Score = 39.9 bits (89), Expect = 0.008
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 486 IMMQNIDECC-RGELYCPNWTRRRKNLSMMSQKYRKDATYLNTKSMLVKVTAGA 644
IM+ NI+E RGE + NLS +S+KYR+DA YLN +S K+ A A
Sbjct: 148 IMVANIEEVLQRGEALSA-LDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVA 200
>BC007122-1|AAH07122.1| 307|Homo sapiens SEC22 vesicle trafficking
protein homolog A (S. cerevisiae) protein.
Length = 307
Score = 68.9 bits (161), Expect = 1e-11
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = +1
Query: 265 QSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG-HRLNT 441
Q P RC+++TG Y +++ + Y++LC NY LAF++L+E+ +EF Y + NT
Sbjct: 46 QLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNT 105
Query: 442 VTRPYTFIEFD 474
RPY FIEFD
Sbjct: 106 AVRPYCFIEFD 116
Score = 31.5 bits (68), Expect = 2.7
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 122 LNMVLMTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFRN*ALSP 271
++M+L + RV DGLPL+A+ D + + + E + KML R A P
Sbjct: 1 MSMILSASVIRVRDGLPLSAS--TDYEQSTGMQECRKYFKMLSRKLAQLP 48
>X92396-1|CAA63133.1| 220|Homo sapiens ORF protein.
Length = 220
Score = 50.4 bits (115), Expect = 5e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +1
Query: 262 PQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNT 441
P + + G YLFHY+ ++ I YL + + ++ + AFN+L EI + F YG R T
Sbjct: 37 PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT 96
Query: 442 VTRPY 456
PY
Sbjct: 97 AL-PY 100
>BC056141-1|AAH56141.1| 220|Homo sapiens synaptobrevin-like 1
protein.
Length = 220
Score = 50.4 bits (115), Expect = 5e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +1
Query: 262 PQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNT 441
P + + G YLFHY+ ++ I YL + + ++ + AFN+L EI + F YG R T
Sbjct: 37 PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT 96
Query: 442 VTRPY 456
PY
Sbjct: 97 AL-PY 100
>AK222794-1|BAD96514.1| 220|Homo sapiens synaptobrevin-like 1
variant protein.
Length = 220
Score = 50.4 bits (115), Expect = 5e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +1
Query: 262 PQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNT 441
P + + G YLFHY+ ++ I YL + + ++ + AFN+L EI + F YG R T
Sbjct: 37 PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT 96
Query: 442 VTRPY 456
PY
Sbjct: 97 AP-PY 100
>AJ295938-1|CAC16891.1| 260|Homo sapiens synaptobrevin like protein
1B protein.
Length = 260
Score = 50.4 bits (115), Expect = 5e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +1
Query: 262 PQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNT 441
P + + G YLFHY+ ++ I YL + + ++ + AFN+L EI + F YG R T
Sbjct: 37 PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT 96
Query: 442 VTRPY 456
PY
Sbjct: 97 AL-PY 100
>AJ271736-1|CAB96816.1| 220|Homo sapiens synaptobrevin-like 1
protein protein.
Length = 220
Score = 50.4 bits (115), Expect = 5e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +1
Query: 262 PQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNT 441
P + + G YLFHY+ ++ I YL + + ++ + AFN+L EI + F YG R T
Sbjct: 37 PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT 96
Query: 442 VTRPY 456
PY
Sbjct: 97 AL-PY 100
>BC018437-1|AAH18437.1| 250|Homo sapiens SEC22 vesicle trafficking
protein homolog C (S. cerevisiae) protein.
Length = 250
Score = 37.9 bits (84), Expect = 0.031
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 265 QSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR-LNT 441
Q P R S E + H+ + + +C +AF +LE + EF Y +
Sbjct: 46 QYPGRGSAEGCDFSIHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGL 105
Query: 442 VTRPYTFIEFD 474
+RPY F+EFD
Sbjct: 106 ASRPYAFLEFD 116
>BC006178-1|AAH06178.1| 303|Homo sapiens SEC22 vesicle trafficking
protein homolog C (S. cerevisiae) protein.
Length = 303
Score = 37.9 bits (84), Expect = 0.031
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 265 QSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR-LNT 441
Q P R S E + H+ + + +C +AF +LE + EF Y +
Sbjct: 46 QYPGRGSAEGCDFSIHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGL 105
Query: 442 VTRPYTFIEFD 474
+RPY F+EFD
Sbjct: 106 ASRPYAFLEFD 116
>AY359041-1|AAQ89400.1| 228|Homo sapiens SEC22C protein.
Length = 228
Score = 37.9 bits (84), Expect = 0.031
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 265 QSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR-LNT 441
Q P R S E + H+ + + +C +AF +LE + EF Y +
Sbjct: 46 QYPGRGSAEGCDFSIHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGL 105
Query: 442 VTRPYTFIEFD 474
+RPY F+EFD
Sbjct: 106 ASRPYAFLEFD 116
>AF039568-1|AAD02171.1| 250|Homo sapiens vesicle trafficking
protein protein.
Length = 250
Score = 37.9 bits (84), Expect = 0.031
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 265 QSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR-LNT 441
Q P R S E + H+ + + +C +AF +LE + EF Y +
Sbjct: 46 QYPGRGSAEGCDFSIHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGL 105
Query: 442 VTRPYTFIEFD 474
+RPY F+EFD
Sbjct: 106 ASRPYAFLEFD 116
>U30883-1|AAA93073.1| 344|Homo sapiens SRp55-1 protein.
Length = 344
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 RNYSKRLAFNYLEEIAQEFFQQYGHRLNT-VTRPYTFIEFD 474
R Y RL++N E+ Q FF YG L + Y F+EF+
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFE 43
>U30829-1|AAA93072.1| 335|Homo sapiens SRp55-3 protein.
Length = 335
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 RNYSKRLAFNYLEEIAQEFFQQYGHRLNT-VTRPYTFIEFD 474
R Y RL++N E+ Q FF YG L + Y F+EF+
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFE 43
>U30828-1|AAA93071.1| 135|Homo sapiens SRp55-2 protein.
Length = 135
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 RNYSKRLAFNYLEEIAQEFFQQYGHRLNT-VTRPYTFIEFD 474
R Y RL++N E+ Q FF YG L + Y F+EF+
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFE 43
>BC006832-1|AAH06832.1| 344|Homo sapiens splicing factor,
arginine/serine-rich 6 protein.
Length = 344
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 RNYSKRLAFNYLEEIAQEFFQQYGHRLNT-VTRPYTFIEFD 474
R Y RL++N E+ Q FF YG L + Y F+EF+
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFE 43
>AL031681-3|CAB43960.1| 344|Homo sapiens splicing factor,
arginine/serine-rich 6 protein.
Length = 344
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 RNYSKRLAFNYLEEIAQEFFQQYGHRLNT-VTRPYTFIEFD 474
R Y RL++N E+ Q FF YG L + Y F+EF+
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFE 43
>AB208976-1|BAD92213.1| 279|Homo sapiens arginine/serine-rich
splicing factor 6 variant protein.
Length = 279
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 RNYSKRLAFNYLEEIAQEFFQQYGHRLNT-VTRPYTFIEFD 474
R Y RL++N E+ Q FF YG L + Y F+EF+
Sbjct: 37 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFE 77
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,685,597
Number of Sequences: 237096
Number of extensions: 1758747
Number of successful extensions: 11677
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11670
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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