Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0020
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 512  LQRGAILSELDTKTQKPIDDVAEVPEGRHVSQHEV 616
            L   A++ EL   T+  I  +AE P GR V   E+
Sbjct: 963  LPYAALIDELKPATRYTIRVIAEGPAGRSVPSAEL 997


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 512  LQRGAILSELDTKTQKPIDDVAEVPEGRHVSQHEV 616
            L   A++ EL   T+  I  +AE P GR V   E+
Sbjct: 959  LPYAALIDELKPATRYTIRVIAEGPAGRSVPSAEL 993


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 179 QPKAARRRLLQS*S-LTPYLKLKCLSLK 99
           +PK   + LL S + L+PYL+  CLS +
Sbjct: 254 RPKMTPQSLLPSQTGLSPYLRFGCLSTR 281


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 536 ELDTKTQKPIDDVAEVPEGRHVSQHEVDA 622
           ++D KT + I+D A+  + R +    +DA
Sbjct: 614 DIDVKTVQVIEDAAQKKKHRAIRPEPIDA 642


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,632
Number of Sequences: 438
Number of extensions: 3374
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)