Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0020
(645 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g11890.1 68414.m01371 vesicle transport protein SEC22, putati... 93 2e-19
At5g52270.1 68418.m06487 vesicle transport protein-related simil... 51 6e-07
At5g22360.1 68418.m02609 synaptobrevin family protein similar to... 43 2e-04
At2g32670.1 68415.m03994 synaptobrevin family protein similar to... 36 0.017
At4g32150.1 68417.m04573 synaptobrevin family protein similar to... 36 0.023
At4g15780.1 68417.m02402 synaptobrevin-related family protein si... 36 0.030
At2g33120.1 68415.m04060 synaptobrevin-related protein / vesicl... 35 0.040
At2g25340.1 68415.m03031 synaptobrevin family protein similar to... 35 0.040
At1g04750.1 68414.m00470 synaptobrevin family protein similar to... 34 0.070
At2g33110.1 68415.m04059 synaptobrevin family protein similar to... 33 0.16
At1g04760.1 68414.m00472 synaptobrevin family protein similar to... 32 0.28
At3g13250.1 68416.m01668 hypothetical protein low similarity to ... 32 0.37
At5g11150.1 68418.m01303 synaptobrevin / vesicle-associated memb... 31 0.87
At3g03750.2 68416.m00381 SET domain-containing protein low simil... 29 2.6
At3g03750.1 68416.m00380 SET domain-containing protein low simil... 29 2.6
At1g29180.1 68414.m03570 DC1 domain-containing protein contains ... 27 8.1
>At1g11890.1 68414.m01371 vesicle transport protein SEC22, putative
identified as SEC22 by Raikhel, NV, et al. in Plant
Physiol. 124: 1558-69 (2000); similar to vesicle
trafficking protein gb|U91538 from Mus musculus; ESTs
gb|F15494 and gb|F14097 come from this gene
Length = 218
Score = 92.7 bits (220), Expect = 2e-19
Identities = 36/66 (54%), Positives = 49/66 (74%)
Frame = +1
Query: 277 RCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNTVTRPY 456
R S+ETGPY+FHY+IE +CYL +C+R+Y K+LAF YLE++ EF + G + T RPY
Sbjct: 52 RMSVETGPYVFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARPY 111
Query: 457 TFIEFD 474
FI+FD
Sbjct: 112 AFIKFD 117
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +2
Query: 128 MVLMTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFRN 256
MV MT+IARV DGLPLA + +D + + Y+ Q K LF+N
Sbjct: 1 MVKMTLIARVTDGLPLAEGL-DDGRDLPDSDMYKQQVKALFKN 42
>At5g52270.1 68418.m06487 vesicle transport protein-related similar
to vesicle trafficking protein sec22b [Mus musculus]
GI:1907386
Length = 214
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +1
Query: 307 FHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRL-NTVTRPYTFIEF 471
FH+L+E ICY+ L + +Y ++L FNYL+ + +E + L +++PY+FI F
Sbjct: 64 FHFLVEKKICYIALSDSSYPRKLLFNYLQNLNKELDKLDEKALIQKISKPYSFIRF 119
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 128 MVLMTMIARVADGLPLAATM-QEDEQSACNILEYQNQAKMLFR 253
MV +T++ RV DGLPLA +++ + L Y+ QA+ L +
Sbjct: 1 MVKLTIVGRVEDGLPLAQDQTYVNQEDNTSFLLYKQQAEFLLK 43
>At5g22360.1 68418.m02609 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 221
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 253 ELSPQ-SPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG 426
+LSP+ S R Y+FH L + + +L + + +R+ F+YLEEI F + YG
Sbjct: 35 KLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYG 93
>At2g32670.1 68415.m03994 synaptobrevin family protein similar to
vesicle-associated membrane protein 7 [Rattus
norvegicus] GI:9502258, SP|P51809 Synaptobrevin-like
protein 1 {Homo sapiens}; contains Pfam profile PF00957:
Synaptobrevin
Length = 285
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 262 PQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG 426
P S + + + F+YL+EN Y V+ + +++ +LE + ++F ++YG
Sbjct: 105 PSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYG 159
>At4g32150.1 68417.m04573 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 301 YLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNT 441
Y+FH + + L + E +R+ F +LE+I Q F + YG ++T
Sbjct: 51 YVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHT 97
>At4g15780.1 68417.m02402 synaptobrevin-related family protein
similar to Vesicle-associated membrane protein 722
(AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
{Arabidopsis thaliana}
Length = 194
Score = 35.5 bits (78), Expect = 0.030
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +1
Query: 199 AERVQYT-RVPESG*NAV*ELSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRL 375
AE ++T P + +L S + + + F++L+E+ Y V+ + + SK++
Sbjct: 19 AEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDAYAYCVVAKDSLSKQI 78
Query: 376 AFNYLEEIAQEFFQQYG 426
+ +LE + +F ++YG
Sbjct: 79 SIAFLERVKADFKKRYG 95
>At2g33120.1 68415.m04060 synaptobrevin-related protein /
vesicle-associated membrane protein 722 (VAMP722) (SAR1)
identical to r to Vesicle-associated membrane protein
722 (AtVAMP722) Synaptobrevin-related protein 1
(SP:P47192) {Arabidopsis thaliana}; identical to cDNA
synaptobrevin-related protein (SAR1) GI:600709
Length = 221
Score = 35.1 bits (77), Expect = 0.040
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 262 PQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG 426
P S + + + F+YL+EN Y V+ + +++ +LE + ++F ++YG
Sbjct: 40 PSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYG 94
>At2g25340.1 68415.m03031 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 35.1 bits (77), Expect = 0.040
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +1
Query: 301 YLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNT 441
Y+FH + + L + + + +R+ F++LE+I Q F + YG +++
Sbjct: 51 YVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHS 97
>At1g04750.1 68414.m00470 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana};
Length = 219
Score = 34.3 bits (75), Expect = 0.070
Identities = 13/55 (23%), Positives = 31/55 (56%)
Frame = +1
Query: 262 PQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG 426
P S + + + F+YL+E+ Y V+ + +++ ++LE + ++F ++YG
Sbjct: 40 PSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYG 94
>At2g33110.1 68415.m04059 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 217
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 262 PQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG 426
P S + + + F+ L+EN Y V+ + + + +LE + ++F+++YG
Sbjct: 40 PSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYG 94
>At1g04760.1 68414.m00472 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 220
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 262 PQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG 426
P S + + + F+YL +N Y V+ + +++ +LE + ++F ++YG
Sbjct: 40 PSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYG 94
>At3g13250.1 68416.m01668 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1419
Score = 31.9 bits (69), Expect = 0.37
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = -1
Query: 468 LYERVRTSHGVQPVSVLLEEFLCYFLEIIEC*SFTVVSFTQDQITYVIFNQIMEEIRAGF 289
+ ER SH + L ++FLC IE + F Q ++ FN I E +G
Sbjct: 286 IQEREDESHTLLQSKRLFQQFLCDAYTTIESNRLAYIKFNQSKLRCENFNSIKESASSGS 345
Query: 288 NGTSHRG 268
S G
Sbjct: 346 TTMSEEG 352
>At5g11150.1 68418.m01303 synaptobrevin / vesicle-associated
membrane protein 713 (VAMP713) identified as AtVAMP713
by Sanderfoot, A.A., et al. in Plant Physiol. 124:
1558-69 (2000); similar to Vesicle-associated membrane
protein 722 (AtVAMP722) Synaptobrevin-related protein 1
(SP:P47192) {Arabidopsis thaliana}; synaptobrevin-like
protein Sybl1, Mus musculus, EMBL:MMU133536
Length = 221
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +1
Query: 301 YLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNT 441
Y+FH + + L + + + + F +L++I Q F + YG +++
Sbjct: 52 YIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHS 98
>At3g03750.2 68416.m00381 SET domain-containing protein low
similarity to G9a [Homo sapiens] GI:287865; contains
Pfam profiles PF00856: SET domain, PF05033: Pre-SET
motif
Length = 354
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 316 LIENHICYLVLCERNYSKRLAFNYLEEIAQE 408
L++ C CE Y K LAF +EEIA E
Sbjct: 139 LVDESGCECERCEEGYCKCLAFAGMEEIANE 169
>At3g03750.1 68416.m00380 SET domain-containing protein low
similarity to G9a [Homo sapiens] GI:287865; contains
Pfam profiles PF00856: SET domain, PF05033: Pre-SET
motif
Length = 338
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 316 LIENHICYLVLCERNYSKRLAFNYLEEIAQE 408
L++ C CE Y K LAF +EEIA E
Sbjct: 139 LVDESGCECERCEEGYCKCLAFAGMEEIANE 169
>At1g29180.1 68414.m03570 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 444
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 598 VASFRYFCDIIDRFLRLRVQFGQYSSPLQHSS 503
+A F Y CD + ++ VQ S PL H S
Sbjct: 245 IAGFFYVCDKEGCYFKIHVQCATISEPLVHES 276
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,119
Number of Sequences: 28952
Number of extensions: 257690
Number of successful extensions: 656
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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