Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0019
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 155 4e-38
07_01_0756 + 5819367-5820038,5820847-5821005 152 3e-37
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 76 2e-14
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 48 9e-06
03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10... 29 2.6
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.5
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031 29 4.6
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 6.0
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 155 bits (375), Expect = 4e-38
Identities = 70/81 (86%), Positives = 76/81 (93%)
Frame = +2
Query: 266 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 445
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Query: 446 AKLSVLPVRRGYWGNKIGKPH 508
AKLSV+PVRRGYWGNKIG+PH
Sbjct: 141 AKLSVVPVRRGYWGNKIGQPH 161
Score = 103 bits (248), Expect = 1e-22
Identities = 45/59 (76%), Positives = 54/59 (91%)
Frame = +1
Query: 511 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFAK 687
VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGNF K
Sbjct: 163 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 221
Score = 62.1 bits (144), Expect = 4e-10
Identities = 24/41 (58%), Positives = 36/41 (87%)
Frame = +3
Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I+
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIV 78
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 152 bits (368), Expect = 3e-37
Identities = 69/81 (85%), Positives = 75/81 (92%)
Frame = +2
Query: 266 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 445
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Query: 446 AKLSVLPVRRGYWGNKIGKPH 508
AKLSV+PVRRGYWGNKIGKPH
Sbjct: 144 AKLSVVPVRRGYWGNKIGKPH 164
Score = 104 bits (249), Expect = 8e-23
Identities = 46/63 (73%), Positives = 55/63 (87%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGN
Sbjct: 162 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGN 221
Query: 679 FAK 687
F K
Sbjct: 222 FVK 224
Score = 62.1 bits (144), Expect = 4e-10
Identities = 25/41 (60%), Positives = 36/41 (87%)
Frame = +3
Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I+
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIV 81
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/64 (54%), Positives = 46/64 (71%)
Frame = +1
Query: 496 RKATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 675
RK V CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL
Sbjct: 46 RKPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLS 105
Query: 676 NFAK 687
NF K
Sbjct: 106 NFVK 109
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 353 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 448
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 47.6 bits (108), Expect = 9e-06
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +2
Query: 251 DLDFFLGPS--LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATA 424
D+D PS ++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV A
Sbjct: 159 DMDREQRPSDEFSERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEA 218
Query: 425 IRGAIILAKLSVLPV 469
I A + + +++ V
Sbjct: 219 ITKAAMNGRRNLVTV 233
>03_01_0013 -
105281-105552,105762-105838,105839-106524,106655-106738,
106914-107114,107202-107309,107766-107855,108505-108551,
109096-109276,110010-110135,110220-110386,110877-111072
Length = 744
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -1
Query: 292 NLIIQGRAEEEIKISNSLIGKENK*MLSSLSIFPSRTRRPSLVTGTHSFWSS 137
N +I RAE ++K+S+S+IG+E+ + + S++ G H F +S
Sbjct: 399 NNVIMRRAERKLKLSHSVIGEEDATYGKGKYVENEASDMRSIIFGLHLFDTS 450
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 415 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 299
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
Length = 538
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 630 YTSHLKKLLRNWRRHNTSTTRCRNQPDCYGTTLAGDLA 517
Y ++++L+++W H+ R + PD G + DLA
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA 447
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 90 DRHGLYLHRVIRIRRENRHVHRLEQRPP 7
D HGL+ + + RH+HR+E +PP
Sbjct: 1006 DMHGLHASEAVEVLE--RHLHRIEFQPP 1031
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,601,262
Number of Sequences: 37544
Number of extensions: 455589
Number of successful extensions: 1330
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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