Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0019
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 173 1e-43
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 32 0.38
SB_52533| Best HMM Match : rve (HMM E-Value=2) 31 0.87
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 31 1.2
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033) 30 1.5
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4) 30 1.5
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 2.7
SB_45260| Best HMM Match : RVT_1 (HMM E-Value=1.2) 29 2.7
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 3.5
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 3.5
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 6.2
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 6.2
SB_58630| Best HMM Match : IncA (HMM E-Value=0.5) 28 8.1
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24) 28 8.1
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 173 bits (421), Expect = 1e-43
Identities = 82/103 (79%), Positives = 91/103 (88%), Gaps = 1/103 (0%)
Frame = +2
Query: 203 QTREHLLVF-FTNQRIRDLDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 379
+T EH+ +F + +DFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24 KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83
Query: 380 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPH 508
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 84 HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPH 126
Score = 117 bits (281), Expect = 1e-26
Identities = 53/63 (84%), Positives = 55/63 (87%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 678
K VPCKVTGKCGS VRLIPAPRGTGIVSAPVPKKLLQMAG++DCYTS RG T TLGN
Sbjct: 124 KPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGN 183
Query: 679 FAK 687
FAK
Sbjct: 184 FAK 186
Score = 60.9 bits (141), Expect = 9e-10
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +3
Query: 153 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
WVPVTKLGRLV++ KI LE IYLFSLPIKEFEI+
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEII 42
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -1
Query: 454 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 275
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292
Query: 274 RAEEEI 257
R ++E+
Sbjct: 293 RNQDEL 298
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -1
Query: 454 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 275
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576
Query: 274 RAEEEI 257
R ++E+
Sbjct: 577 RNQDEL 582
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 239 QRIRDLDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 394
QR+R L N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 81 QRLRSKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 239 QRIRDLDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 394
QR+R L N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 141 QRLRGKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
Length = 382
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 177 GRVW*QEPTLSGLPCRAHDHGRDHDRVHEDRHGLYLH 67
G +W + L LP H DHDR H RH +H
Sbjct: 103 GFLWQKNGVLLSLPPPQFRHSHDHDRHHYHRHHNNIH 139
>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
Length = 394
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 636 ILYTSHLKKLLRNWRRHNTSTTRCRNQPDCYGTTLAGDLARDGCGFPILL 487
+LYT + + RN++ +NT T CR Q + TT+ L D IL+
Sbjct: 36 LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 84
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 636 ILYTSHLKKLLRNWRRHNTSTTRCRNQPDCYGTTLAGDLARDGCGFPILL 487
+LYT + + RN++ +NT T CR Q + TT+ L D IL+
Sbjct: 285 LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 333
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 657 TTS*RVAI-LYTSHLKKLLRNWRRHNTSTTRCRNQPDCYGTTLAGDLARDGCGFPILL 487
T S +++I LYT + + RN++ +NT T CR Q + TT+ L D IL+
Sbjct: 136 TDSEKLSIPLYTRNSTRTARNYQYYNTRETLCR-QRETINTTIHAKLYTDSEKLSILV 192
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -1
Query: 427 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 296
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_45260| Best HMM Match : RVT_1 (HMM E-Value=1.2)
Length = 584
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 162 VTKLGRLVREGKIDKLESIYLFSLPIKEFEILISSSARP*MMRFLRSCLYRNKH 323
+ K+ RL I++ Y FS P ++ + IS+ R + +R+CL+RN +
Sbjct: 138 IDKVKRLNILRTINRYSDNYCFSKPCRQISVRISARTR--RRKDVRNCLFRNNN 189
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 281 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 394
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 281 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 394
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 281 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 394
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 281 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 394
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 331 TAHTFQGICCHWRQQRSYW 387
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 532 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 675
+CG+ + + R ++ P+P L ++ +Q C + STGT G
Sbjct: 591 RCGTHALTKTVSERVPDVLKHPLPPPLQELQELQVCDPPSTSSTGTTG 638
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 329 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 418
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
>SB_58630| Best HMM Match : IncA (HMM E-Value=0.5)
Length = 307
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 527 VTLQGTGVAFLSCYPSNLFGLVELTA*QG**RLEWQWRLPCCTSHPNQ 384
+ L TGV FL+ LFGL G ++ W P ++HP Q
Sbjct: 59 IVLVSTGVVFLNAELCALFGLEAKDDQMGSGASQYPWGSPHLSAHPPQ 106
>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
Length = 963
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 456 DSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPA 325
D+L+ IAP A SLL + P+++P A +AL ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,369,579
Number of Sequences: 59808
Number of extensions: 503899
Number of successful extensions: 1479
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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