Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0019
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   143   9e-35
U67954-8|AAB52608.2|  782|Caenorhabditis elegans Sulfate permeas...    31   0.77 
AY954524-1|AAX34432.2|  762|Caenorhabditis elegans anion transpo...    31   0.77 
AY887909-1|AAX34421.1|  782|Caenorhabditis elegans anion transpo...    31   0.77 
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    28   7.2  
U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    27   9.5  
AF100662-2|AAC68976.1|  478|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  143 bits (347), Expect = 9e-35
 Identities = 66/78 (84%), Positives = 72/78 (92%)
 Frame = +2

Query: 275 SLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKL 454
           +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL
Sbjct: 97  NLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKL 156

Query: 455 SVLPVRRGYWGNKIGKPH 508
           +V+PVRRGYWGNKIG PH
Sbjct: 157 AVVPVRRGYWGNKIGLPH 174



 Score =  114 bits (275), Expect = 5e-26
 Identities = 51/59 (86%), Positives = 55/59 (93%)
 Frame = +1

Query: 511 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFAK 687
           VPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST TLGNFAK
Sbjct: 176 VPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAK 234



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/40 (72%), Positives = 32/40 (80%)
 Frame = +3

Query: 138 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEI+
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEII 91


>U67954-8|AAB52608.2|  782|Caenorhabditis elegans Sulfate permease
           family protein 3 protein.
          Length = 782

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 645 RVAILYTSHLKKLLRNWRRHNTSTTRCRNQPDCYG 541
           R A ++ S LK   R W+R   S  RC+   DC G
Sbjct: 602 RSADIFDSKLKSARRRWKRDQKSENRCKLVIDCDG 636


>AY954524-1|AAX34432.2|  762|Caenorhabditis elegans anion
           transporter SULP-3b protein.
          Length = 762

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 645 RVAILYTSHLKKLLRNWRRHNTSTTRCRNQPDCYG 541
           R A ++ S LK   R W+R   S  RC+   DC G
Sbjct: 582 RSADIFDSKLKSARRRWKRDQKSENRCKLVIDCDG 616


>AY887909-1|AAX34421.1|  782|Caenorhabditis elegans anion
           transporter SULP-3a protein.
          Length = 782

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 645 RVAILYTSHLKKLLRNWRRHNTSTTRCRNQPDCYG 541
           R A ++ S LK   R W+R   S  RC+   DC G
Sbjct: 602 RSADIFDSKLKSARRRWKRDQKSENRCKLVIDCDG 636


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 532 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 663
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 532 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 663
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 358 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 272
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 358 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 272
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 624 SHLKKLLRNWRRHNTSTTRCRNQPDCYGTTLAGDL 520
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 188 RRKNRQTREHLLVFFTNQRIRDLDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFK-AFVAI 364
           R++ R T ++  +  T +RIR   F +  S    +L  +PV+K+    +  RF  A+++ 
Sbjct: 24  RKRRRATPKYRNLHATRERIRVESFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISF 83

Query: 365 GDN 373
            DN
Sbjct: 84  LDN 86


>AF100662-2|AAC68976.1|  478|Caenorhabditis elegans Hypothetical
           protein H34C03.1 protein.
          Length = 478

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 183 VREGKIDKLESIYLFSLPIKEFEILISSSARP*MMRFLRSCLYRNKHV 326
           ++EG  DK++   +F   I  F++  S  +R  ++ FL S ++ +K V
Sbjct: 170 IQEGDNDKMDFEQVFETLISIFKLHASEYSRVVILNFLNSPVFESKKV 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,976,053
Number of Sequences: 27780
Number of extensions: 360453
Number of successful extensions: 1003
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)