Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0018
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 99 1e-21
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 58 8e-09
At5g13650.2 68418.m01585 elongation factor family protein contai... 56 3e-08
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 54 1e-07
At5g13650.1 68418.m01584 elongation factor family protein contai... 54 1e-07
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 53 2e-07
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 53 2e-07
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 51 9e-07
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 50 2e-06
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 49 4e-06
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 49 4e-06
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 47 1e-05
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 46 3e-05
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 33 0.15
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 33 0.15
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 32 0.34
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 32 0.34
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 32 0.34
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 32 0.34
At3g06620.1 68416.m00769 protein kinase family protein contains ... 32 0.45
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 31 0.78
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 30 1.4
At5g17810.1 68418.m02088 homeobox-leucine zipper transcription f... 30 1.8
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 30 1.8
At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative St... 30 1.8
At3g03660.1 68416.m00369 homeobox-leucine zipper transcription f... 29 3.1
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 29 4.1
At1g66310.1 68414.m07530 F-box family protein contains F-box dom... 28 5.5
At3g28790.1 68416.m03593 expressed protein 27 9.6
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 27 9.6
At1g12080.2 68414.m01397 expressed protein 27 9.6
At1g12080.1 68414.m01396 expressed protein 27 9.6
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 99 bits (238), Expect = 1e-21
Identities = 49/70 (70%), Positives = 55/70 (78%)
Frame = +3
Query: 51 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 230
MV FT DE+R +MD K NIRNMSVIAHVDHGKSTLTDSLV+ AGIIA AG+ R TDTR
Sbjct: 1 MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR 60
Query: 231 KDEQDRCIPL 260
DE +R I +
Sbjct: 61 ADEAERGITI 70
Score = 88.2 bits (209), Expect = 5e-18
Identities = 48/84 (57%), Positives = 59/84 (70%)
Frame = +2
Query: 257 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 436
IKST IS+++E+ ++ L T R+ +E +LINLIDSPGHVDFSSEVTAALR+TDGA
Sbjct: 70 IKSTGISLYYEMTDESLKSFTGA--RDGNE--YLINLIDSPGHVDFSSEVTAALRITDGA 125
Query: 437 LXXXXXXXXXXXQTETVLRQAIAE 508
L QTETVLRQA+ E
Sbjct: 126 LVVVDCIEGVCVQTETVLRQALGE 149
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/72 (51%), Positives = 47/72 (65%)
Frame = +1
Query: 511 IKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVLVDPSKGS 690
I+P+L +NKMDR YQTF R++EN NVI+ATY D +G+V V P KG+
Sbjct: 151 IRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDP--LLGDVQVYPEKGT 208
Query: 691 VGFGSGLHGWAF 726
V F +GLHGWAF
Sbjct: 209 VAFSAGLHGWAF 220
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 57.6 bits (133), Expect = 8e-09
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 LHPIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRV 424
LHP + + L+E+ IT + K + +NLIDSPGH+DF SEV+ A R+
Sbjct: 38 LHPRLAGKLRFMDYLDEEQRRAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARL 97
Query: 425 TDGALXXXXXXXXXXXQTETVLRQAIAE 508
+DGAL QT VLRQA E
Sbjct: 98 SDGALVLVDAVEGVHIQTHAVLRQAWIE 125
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +3
Query: 99 RNIRNMSVIAHVDHGKSTLTDSLV--SKAGIIAGARAGETRFTDTRKDEQDRCIPL 260
R +RN+ ++AHVDHGK+TL D L+ S G++ AG+ RF D +EQ R I +
Sbjct: 7 RKVRNICILAHVDHGKTTLADHLIASSGGGVLHPRLAGKLRFMDYLDEEQRRAITM 62
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +1
Query: 511 IKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDG--GPMGEVLVDPS 681
+ P L +NK+DR Y RIV VN I++ Y + + +L PS
Sbjct: 127 LTPCLVLNKIDRLIFELRLSPMEAYTRLIRIVHEVNGIVSAYKSEKYLSDVDSILASPS 185
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/73 (32%), Positives = 46/73 (63%)
Frame = +3
Query: 42 PSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFT 221
PS +V+ + +D++ N+RN++++AHVDHGK+TL DS++ +A + + + R
Sbjct: 62 PSTAEPASVEVKKKQLDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIM 121
Query: 222 DTRKDEQDRCIPL 260
D+ E++R I +
Sbjct: 122 DSNDLERERGITI 134
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +2
Query: 347 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 502
K +N+ID+PGH DF EV L + DG L QT VL++A+
Sbjct: 144 KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKAL 195
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/80 (41%), Positives = 45/80 (56%)
Frame = +2
Query: 260 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 439
+ TA + E E++ + IT+ +K IN+ID+PGHVDF+ EV ALRV DGA+
Sbjct: 131 EGTATMDWMEQEQERGITITSAATTTFWDK-HRINIIDTPGHVDFTLEVERALRVLDGAI 189
Query: 440 XXXXXXXXXXXQTETVLRQA 499
Q+ETV RQA
Sbjct: 190 CLFDSVAGVEPQSETVWRQA 209
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 99 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGE----TRFTDTRKDEQDRCIPL 260
++ RN+ ++AH+D GK+T T+ ++ G + GE T D + EQ+R I +
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG--RNYKIGEVHEGTATMDWMEQEQERGITI 149
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/58 (36%), Positives = 40/58 (68%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPL 260
+D++ N+RN++++AHVDHGK+TL DS++ +A + + + R D+ E++R I +
Sbjct: 76 LDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIMDSNDLERERGITI 133
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +2
Query: 347 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 502
K +N+ID+PGH DF EV L + DG L QT VL++A+
Sbjct: 143 KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKAL 194
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +2
Query: 335 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAE 508
+ K +L N++D+PGHV+FS E+TA+LR+ DGA+ TE +R AI +
Sbjct: 203 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAIQD 260
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 81 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDRC 251
G+M +RN++++ H+ HGK+ D LV + ++ A ++TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQERN 189
Query: 252 IPLNLRP 272
I + P
Sbjct: 190 ISIKAVP 196
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +1
Query: 520 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVLVDPSKGSVGF 699
++ +NK+DR Y + +E +N I+ + G + L+DP+ G+V F
Sbjct: 265 VVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHISAASTTAGDLP--LIDPAAGNVCF 322
Query: 700 GSGLHGWAF 726
SG GW+F
Sbjct: 323 ASGTAGWSF 331
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +2
Query: 335 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAE 508
+ K +L N++D+PGHV+FS E+TA+LR+ DGA+ TE +R AI +
Sbjct: 203 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAIQD 260
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 81 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDRC 251
G+M +RN++++ H+ HGK+ D LV + ++ A ++TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQERN 189
Query: 252 IPLNLRP 272
I + P
Sbjct: 190 ISIKAVP 196
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +1
Query: 520 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVLVDPSKGSVGF 699
++ +NK+DR Y + +E +N I+ + G + L+DP+ G+V F
Sbjct: 265 VVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHISAASTTAGDLP--LIDPAAGNVCF 322
Query: 700 GSGLHGWAF 726
SG GW+F
Sbjct: 323 ASGTAGWSF 331
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 50.8 bits (116), Expect = 9e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +3
Query: 102 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPLNLR 269
NIRN S+IAH+DHGKSTL D L+ G + R + +F D E++R I + L+
Sbjct: 85 NIRNFSIIAHIDHGKSTLADKLLQVTGTVQN-RDMKEQFLDNMDLERERGITIKLQ 139
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +2
Query: 353 FLINLIDSPGHVDFSSEVTAALRVTDGAL 439
F +NLID+PGHVDFS EV+ +L +GAL
Sbjct: 152 FCLNLIDTPGHVDFSYEVSRSLAACEGAL 180
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = +2
Query: 335 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAE 508
+ K +L N++D+PG+V+FS E+TA+LR+ DGA+ TE +R AI +
Sbjct: 189 DSRSKSYLCNIMDTPGNVNFSDEMTASLRLADGAVFIVDAAQGVMVNTERAIRHAIQD 246
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 81 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDRC 251
G+M +RN++++ H+ HGK+ D LV + ++ A R+TDTR DEQ+R
Sbjct: 116 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHRMSTFNAENDKHMRYTDTRVDEQERN 175
Query: 252 IPLNLRP 272
I + P
Sbjct: 176 ISIKAVP 182
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +1
Query: 520 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVLVDPSKGSVGF 699
++ +NK+DR Y + +E +N I+ + + + L+DP+ G+V F
Sbjct: 251 VVVINKVDRLITELKLPPRDAYYKLRYTIEVINNHISAASTNAADLP--LIDPAAGNVCF 308
Query: 700 GSGLHGWAF 726
SG GW+F
Sbjct: 309 ASGTAGWSF 317
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +2
Query: 347 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 496
K + +N+ID+PGHVDF+ EV ALRV DGA+ Q+ TV RQ
Sbjct: 131 KDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 180
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 188
MDK +RN+ + AH+D GK+TLT+ ++ G I
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +2
Query: 347 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 496
K + +N+ID+PGHVDF+ EV ALRV DGA+ Q+ TV RQ
Sbjct: 131 KDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 180
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 188
MDK +RN+ + AH+D GK+TLT+ ++ G I
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRI 92
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 57 NFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKD 236
+FTV RG ++K+ N+ I HVDHGK+TLT +L I + A + D +
Sbjct: 63 SFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDEIDAAPE 122
Query: 237 EQDRCIPLN 263
E+ R I +N
Sbjct: 123 ERARGITIN 131
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +2
Query: 335 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 439
++ G+L+NLID+PGHVDFS EV+ +L GAL
Sbjct: 129 DQEASGYLLNLIDTPGHVDFSYEVSRSLSACQGAL 163
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +3
Query: 105 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQ 242
IRN S+IAH+DHGKSTL D L+ G I G+ ++ D + E+
Sbjct: 66 IRNFSIIAHIDHGKSTLADRLMELTGTIKKGH-GQPQYLDKLQRER 110
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 519 RLDASAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 388
++D+ A T S T PD ST T APSVT+ + + EK+
Sbjct: 372 KVDSEACQNHPTASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 415
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 519 RLDASAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 388
++D+ A T S T PD ST T APSVT+ + + EK+
Sbjct: 633 KVDSEACQNHPTASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 676
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At3g06620.1 68416.m00769 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 773
Score = 31.9 bits (69), Expect = 0.45
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = -2
Query: 564 LELKKSTVHFVHEQNRLDASAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 385
LEL++S H E +RL S + + SV H P ++ APS +S A + S
Sbjct: 14 LELEESQEHLKQEMSRLKVSTELRQRSHSVSPHRPARRNIGEGAPSWRKSGAASFRNASP 73
Query: 384 CPGES 370
ES
Sbjct: 74 LRKES 78
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPL 260
N+ I HVDHGK+TLT ++ A+A D +E+ R I +
Sbjct: 69 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITI 118
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 114 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 215
++++ HVDHGK+TL D + K+ + A G T+
Sbjct: 504 ITIMGHVDHGKTTLLD-YIRKSKVAASEAGGITQ 536
>At5g17810.1 68418.m02088 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana};
Length = 268
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 124 SPTSITASQPSRTRWFPRPVSLLVRE 201
SP+S T+++P R RW P+P +L+ E
Sbjct: 9 SPSS-TSTEPVRARWSPKPEQILILE 33
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSLVSKAGIIA 191
N++++ HVD GKSTL+ L+ G I+
Sbjct: 241 NLAIVGHVDSGKSTLSGRLLHLLGRIS 267
>At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative
Strong similarity to beta-keto-Coa synthase gb|U37088
from Simmondsia chinensis, GI:4091810
Length = 528
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -1
Query: 508 LGNSLTQYCFSLYTHTRHTVNNHKGSISDTECSCYFRREIN 386
L N + C S Y HTV HKGS D +C ++RE N
Sbjct: 299 LSNRSSDRCRSKY-QLIHTVRTHKGS-DDNAFNCVYQREDN 337
>At3g03660.1 68416.m00369 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana}
Length = 199
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 124 SPTSITASQPSRTRWFPRPVSLLVRE 201
S + T+++P R+RW P+P +L+ E
Sbjct: 20 SASGSTSAEPVRSRWSPKPEQILILE 45
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 114 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAG 206
++V+ HVDHGK++L D+L + + +A AG
Sbjct: 222 VTVMGHVDHGKTSLLDALRNTS--VAAREAG 250
>At1g66310.1 68414.m07530 F-box family protein contains F-box domain
Pfam:PF00646
Length = 442
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 614 LTSL*PHITMMVVPWVRCLSTLARALLVSGLVFMGGLS 727
LTSL P + ++V+ WV+ + LA +L+SG + + L+
Sbjct: 161 LTSL-PCVKVIVLEWVKFANDLALEMLISGCLVLESLT 197
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 27.5 bits (58), Expect = 9.6
Identities = 25/68 (36%), Positives = 32/68 (47%)
Frame = -2
Query: 489 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 310
ST + T TP T + +T APS T +A TSE+ S + K S S SG V
Sbjct: 294 STPTPSTPTPSTPTPSTPAPS-TPAAGKTSEKGSESASMKKESNSKSES-ESAASGSVSK 351
Query: 309 TKSFSSSS 286
TK + S
Sbjct: 352 TKETNKGS 359
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -2
Query: 510 ASAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 388
AS+ ST T T STT APS T+S AV + +
Sbjct: 80 ASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNST 120
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 477 VCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 385
V T TP + +A VT + AV EEK T
Sbjct: 85 VITETPVVEEEEKKAEEVTETPAVVEEEKKT 115
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 477 VCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 385
V T TP + +A VT + AV EEK T
Sbjct: 51 VITETPVVEEEEKKAEEVTETPAVVEEEKKT 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,225,644
Number of Sequences: 28952
Number of extensions: 330150
Number of successful extensions: 1045
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -