Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0016
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.4  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   5.8  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   7.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   7.7  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 493 FIRTQTKSPCSLWSSHFT 440
           F+   + +P  LW+SH T
Sbjct: 425 FVARNSDTPIILWTSHLT 442


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 275 YRSSRGHHEHPDTVPP 322
           Y SS+ HH H    PP
Sbjct: 48  YASSQHHHHHLQARPP 63


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -3

Query: 663 RNKQNNFTYREDLLNSPKNIQIYK 592
           +N ++N+T+  ++ +S K   IY+
Sbjct: 33  QNTEHNYTHNNEMYHSVKEEPIYE 56


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 244 TAGRSWRLCFSSVYNDWTTLRIRSPSRCG 158
           T GR+W +   S  N    L I  P+  G
Sbjct: 299 TFGRAWAMDDESDINGTPPLHISGPAEAG 327


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 248 HHSQHRSHKYRSSRGHHEHP 307
           HH Q+ SH+  S+  +  HP
Sbjct: 317 HHQQNMSHEELSAMVNRCHP 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,514
Number of Sequences: 336
Number of extensions: 3627
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)