Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0013
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 53 4e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.008
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.013
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 31 0.24
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.32
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 30 0.32
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 29 0.55
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.73
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.73
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.97
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 29 0.97
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 1.3
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 28 1.3
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 28 1.7
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.2
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 2.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 3.0
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.0
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 3.0
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 27 3.9
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 27 3.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.9
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 5.2
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.8
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 6.8
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 9.0
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 53.2 bits (122), Expect = 4e-08
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPNGKDGSSTAHRKVF 693
V RD+ TG S+GFGF+ F + + + H +DG+ D + IP ++ TA K+F
Sbjct: 194 VMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPR-EEQEKTA--KMF 250
Query: 694 VGRCTENITAEDLREYFGSFGQV 762
VG + T E+ R +F FG+V
Sbjct: 251 VGGVPGDCTEEEFRNFFNQFGRV 273
Score = 35.5 bits (78), Expect = 0.008
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 401 ESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDL 508
E+ P + + GL W+TT++++RDYF FG++
Sbjct: 154 ETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEV 189
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+F+G T + LR+YF FG+V
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEV 189
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 386 AFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFG 502
A PR E + + + + V G+P TEE R++F+ FG
Sbjct: 237 AIPREE----QEKTAKMFVGGVPGDCTEEEFRNFFNQFG 271
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.5 bits (78), Expect = 0.008
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 18/104 (17%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR--HMIDGRWCDVRIPNGK------- 660
V +V D ++G SKG+G++ F EA A+ IDGR ++ + N +
Sbjct: 290 VGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPY 349
Query: 661 ---------DGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
D S VFVG + N T +DL FG G +Q
Sbjct: 350 AQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQ 393
Score = 31.5 bits (68), Expect = 0.14
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWC--DVRIPNGKDGSSTAHR 684
+++ D ++G KGFG++ F++ ++ + + H I GR C D P G S R
Sbjct: 395 IRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR-TGGGSRGGR 453
Query: 685 KVFVGR 702
F GR
Sbjct: 454 GGFGGR 459
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect(2) = 0.013
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRAL--GRRHMIDGRWCDVRIPNGKDGSSTA 678
D TGLS+ +GF++F+ + Q AL + ++ GR + + + K +S A
Sbjct: 217 DPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIA 268
Score = 25.0 bits (52), Expect(2) = 0.013
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 688 VFVGRCTENITAEDLREYFGSFGQV 762
VFVG N++ +DL+ F FG++
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRI 323
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 30.7 bits (66), Expect = 0.24
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 688 VFVGRCTENITAEDLREYFGSFGQV 762
V+V + ENIT ++LR YF FG++
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEI 202
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 30.3 bits (65), Expect = 0.32
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 538 TGLSKGFGFIKFAEYEAQLRA 600
+G+SKG+GF+ F + EA +RA
Sbjct: 421 SGISKGYGFVAFRQIEAAVRA 441
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.3 bits (65), Expect = 0.32
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 676 AHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
A R +++G +++T E L+E F FG+++
Sbjct: 412 ASRNIYIGNADDSLTIERLKEDFEEFGEIE 441
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 670 STAHRKVFVGRCTENITAEDLREYFGSFGQV 762
S A R VF+G IT +++RE FG +
Sbjct: 202 SGACRNVFLGNLPNGITEDEIREDLEPFGPI 232
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.55
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
V + + RD TG SKGF F+K+ + + + A+
Sbjct: 58 VDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.1 bits (62), Expect = 0.73
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
++FVGR T ED+ ++F +GQ+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQI 30
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.1 bits (62), Expect = 0.73
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 667 SSTAHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
++ A R VF+G + +++ E FG FG+++
Sbjct: 294 NTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIE 326
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.97
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 538 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENI 717
TG KGFGF+ F + + ++A+ H W R+ G+D S K + R
Sbjct: 265 TGKCKGFGFVDFPDIDTCMKAMELGH---NSW---RLEYGEDRSKRMRNKSPMARSGRFN 318
Query: 718 TAEDL 732
AE L
Sbjct: 319 DAESL 323
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 688 VFVGRCTENITAEDLREYFGSFGQVQ 765
+FVG T DL+E+FG GQ++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIR 255
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 28.7 bits (61), Expect = 0.97
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 186 VSEGEQDEPIELPTEEDGSLLLSP 257
+ EGE+DE +ELP E G L+P
Sbjct: 173 LEEGEEDELLELPPETSGRKKLTP 196
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
+VFV + +T+E LR +F SFG+V
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEV 120
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
++ D +T +S+G+GF++F + Q AL
Sbjct: 217 KIMTDPQTNVSRGYGFVRFTDENDQKSAL 245
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 667 SSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
+ TA+ VFVG ++ ++ E+L+ F +FG++
Sbjct: 298 ADTANSTVFVGGLSKFVSEEELKYLFQNFGEI 329
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 433 SYSSRLT-MEDDRRSCTRLLLLLWRFVMVQ---VKRDTRTGLSKGFGFIKFAEYEAQLRA 600
S + R+T + DD R L L RF +Q + +D TG +KGF F+ + + + ++A
Sbjct: 201 SATLRVTNLSDDTRE-EELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKA 259
Query: 601 LGR 609
R
Sbjct: 260 RDR 262
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +1
Query: 508 VMVQVKRDTR---TGLSKGFGFIKFAEYEAQLRAL 603
V+ Q K +T G SKGFGF++F ++ L AL
Sbjct: 522 VLKQAKVETEKAGAGRSKGFGFMQFISHKYALMAL 556
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 132 EEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSL 245
E + R+S ++ + P+S +P++ PTE+ GSL
Sbjct: 195 EALSSSRFSRPQVGQQQPLSSAFPFQPVKQPTEQPGSL 232
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVF 693
V ++RD + SKGFG+I++ + AL + + D ++R+ G D +T
Sbjct: 369 VHLQRDDQNR-SKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTSSM 427
Query: 694 VGRCTENITAED 729
+ R E + ++
Sbjct: 428 LKRFDETLARQE 439
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 600
V +V RD R G ++GFGF+ F + + L+A
Sbjct: 57 VKTKVVRD-REGKTRGFGFVSFKDSDQFLKA 86
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
++++ + R G +GFGF+ FA E Q RA+
Sbjct: 248 IKLRGEQRRG--RGFGFVSFANAEDQSRAI 275
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 138 VEGQRWSVSKMTEYVPVSEGEQDEPIELPTEE 233
V Q W + E SE E+ E +E PTEE
Sbjct: 424 VSTQHWGELEEFEEEESSEEEESEDVEYPTEE 455
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
V++ R+ T S+GFGF+ F+ E A+
Sbjct: 130 VRIMREPVTKASRGFGFLSFSTVEEATSAI 159
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Frame = +3
Query: 546 IQRFWLHQIRRVRSSTACIRPPTHDRRALVRCSHPERQG-RLVDGSSKGIR------RPL 704
IQR W +RR + ACI+ + + + +G +L+ G + R R
Sbjct: 730 IQRAWRSYVRRRSEAAACIQKLWNRNKVNMELERVRNEGTKLLQGKKQRRRYSILGSRKF 789
Query: 705 YGEYYS 722
YG+Y S
Sbjct: 790 YGDYLS 795
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 682 RKVFVGRCTENITAEDLREYFGSFGQVQ 765
+++F+ T + +DL+ FG FGQ++
Sbjct: 323 KRLFLRNLTYSCAEDDLKSLFGPFGQLE 350
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL*WFK*NAIRAPDYPK 553
+IV G+ + TEE V D F+ FG + N R Y K
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVK 51
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGRRHM 618
D RTG KG+ I++A E +A+ +++
Sbjct: 44 DRRTGYVKGYALIEYATLEQAQKAVDEKNL 73
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYE 585
QV RD G SKG+GF+ + +E
Sbjct: 130 QVARD-ENGRSKGYGFVSYDSFE 151
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 642 NIAPAPVYHVSAA*CTQLSFVLGEFDEAKTFG 547
N A P+YHV A+ C S + D AKT+G
Sbjct: 470 NGALLPIYHVDASAC---SISISLMDIAKTYG 498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,366
Number of Sequences: 5004
Number of extensions: 53537
Number of successful extensions: 202
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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