Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0013
(769 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 5e-06
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 45 6e-05
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 44 2e-04
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 43 3e-04
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 39 0.004
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 36 0.048
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 35 0.083
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.11
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.25
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 32 0.44
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 32 0.59
SB_38710| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-09) 32 0.59
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 32 0.59
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 32 0.59
SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_51024| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-08) 31 1.4
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 30 2.4
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 29 4.1
SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07) 29 4.1
SB_20194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62) 28 7.2
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 28 7.2
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 28 7.2
SB_28489| Best HMM Match : SAB (HMM E-Value=6) 28 7.2
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 9.5
SB_15552| Best HMM Match : SCP (HMM E-Value=3.6) 28 9.5
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 72.1 bits (169), Expect = 4e-13
Identities = 35/82 (42%), Positives = 48/82 (58%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVFV 696
+VK D T S+GFGF++F + E L H I GR C+VR+P K+ +K+FV
Sbjct: 145 EVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCEVRLPRPKE-ELNVPKKLFV 203
Query: 697 GRCTENITAEDLREYFGSFGQV 762
GR E+ T + L EYF FG+V
Sbjct: 204 GRLPESTTEKTLMEYFAQFGEV 225
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = +2
Query: 431 DLIVLGLPWKTTEEAVRDYFSSFGDL 508
DLIVLGLP+ TTE +++YF+ FG++
Sbjct: 116 DLIVLGLPYATTESEMKEYFTRFGEI 141
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Frame = +3
Query: 168 MTE-YVPVSEGEQ--DEPIELPTEEDGSLLLS 254
MT+ YV V + E D+ IE+ EEDG+LLLS
Sbjct: 1 MTQIYVRVVDDETCPDQAIEIEAEEDGTLLLS 32
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 48.8 bits (111), Expect = 5e-06
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGRR-----HMIDGRWCDVR--IPNGKDGSSTAH-- 681
D+ T S+GFG++ FA+Y+ L + H IDG+ +V+ IP D S+T+H
Sbjct: 48 DSATKKSRGFGYVTFADYKVTRNVLKDKVENGAHRIDGKEVEVKRAIPR-DDNSATSHEK 106
Query: 682 -RKVFVGRCTENITAEDLRE 738
+K+FVG E+ T ED++E
Sbjct: 107 TKKIFVGGLPEDATKEDIQE 126
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 395 RAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDL 508
R E+ PR L V GL +TT E +R+YF ++G+L
Sbjct: 4 RQENTNNDPRAK-LFVGGLNRETTNETLREYFEAYGEL 40
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+FVG T E LREYF ++G++
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGEL 40
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 45.2 bits (102), Expect = 6e-05
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Frame = +1
Query: 535 RTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCDVR--IPNGKDGSSTAH---RKVFV 696
R G S+GFGF+ + ++ L ++ H++D R + + +P + G+ A RK+FV
Sbjct: 84 RDGRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRSVPRDESGAPEAMSKTRKIFV 143
Query: 697 GRCTENITAEDLREYFGS 750
G ED++EYF S
Sbjct: 144 GGLASTTVEEDIKEYFNS 161
Score = 34.7 bits (76), Expect = 0.083
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 350 PAEGWPAYRYWCAFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDL 508
P + + A R + P S + R + + GL W TTEE ++DYFS +G +
Sbjct: 26 PFQCFSASRPFALLPSKMSESEKLR--KIFIGGLNWNTTEEGLKDYFSQWGTI 76
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 658 KDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
K S RK+F+G N T E L++YF +G +
Sbjct: 42 KMSESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTI 76
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +1
Query: 532 TRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRW 633
T+TG SKGFG++ + E+ RAL H+IDG+W
Sbjct: 97 TQTGKSKGFGYVTYENAESAQRALAGTHIIDGKW 130
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/84 (29%), Positives = 43/84 (51%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVF 693
V++ R T G S+ +GF+ F + L + H+I+G+ DV G S R ++
Sbjct: 109 VRIMR-TFLGYSRNYGFVLFKDDGPSKEVLKKSHVINGKTVDV-------GKSRNFRVIY 160
Query: 694 VGRCTENITAEDLREYFGSFGQVQ 765
VG + T + +RE+F FG ++
Sbjct: 161 VGGLPSHFTEQTVREHFKKFGVIE 184
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 646 IPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
+P+ KD + R VFVG E L++YF FG+V+
Sbjct: 69 LPSPKDIEKNS-RSVFVGGLASGTDEEGLKDYFEQFGEVE 107
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +2
Query: 365 PAYRYWCAFPRAESPPPRPR-----CSDLIVLGLPWKTTEEAVRDYFSSFGDL 508
PA + A R S P P+ + V GL T EE ++DYF FG++
Sbjct: 54 PASKPLVAVSRYNSTLPSPKDIEKNSRSVFVGGLASGTDEEGLKDYFEQFGEV 106
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 41.9 bits (94), Expect = 5e-04
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCDVR--IPNG-----KDGS----- 669
+ R + KGFGF+ F + L ++ H++DG+ D + +P G + G+
Sbjct: 135 ERRARMLKGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPRGPGQQAQTGAVMGGP 194
Query: 670 ---STAHRKVFVGRCTENITAEDLREYFGSFGQVQM 768
S KVF+G T EDL+EYF ++G V++
Sbjct: 195 QRGSANDGKVFIGGLAFGTTEEDLKEYFSTYGMVEV 230
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 410 PPRPRCSD--LIVLGLPWKTTEEAVRDYFSSFG 502
P R +D + + GL + TTEE +++YFS++G
Sbjct: 194 PQRGSANDGKVFIGGLAFGTTEEDLKEYFSTYG 226
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGR-RHMIDGRWCDVRIPNGKDGSSTAHRKVFV 696
V RD T S+GFGF+ F + +A L +DG+ T +K+F+
Sbjct: 139 VMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGK-----------KMVTTTKKIFI 187
Query: 697 GRCTENITAEDLREYFGSFGQV 762
G + N + ED+++YF FG+V
Sbjct: 188 GGLSTNTSEEDMKKYFSQFGKV 209
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 35.5 bits (78), Expect = 0.048
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +1
Query: 532 TRTGLSKGFGFIKFAEYEAQLRALGR-RHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCT 708
T +G SKGF F++ + EA LGR H+ID DV + +RKV +
Sbjct: 77 TLSGKSKGFAFVRLRKKEAVESVLGRDDHVIDN--SDVSME-----KQDTYRKVILKNIP 129
Query: 709 ENITAEDLREYFGSFGQV 762
+I + E+F S G++
Sbjct: 130 SSIGESQILEHFSSSGEI 147
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 34.7 bits (76), Expect = 0.083
Identities = 27/100 (27%), Positives = 44/100 (44%)
Frame = +1
Query: 448 LTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDG 627
L+ E + S V V +K D TG +GF F++F +++++ A+ +
Sbjct: 36 LSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQF-KHQSEADAIDPKPAA-- 92
Query: 628 RWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFG 747
P GK +K+FVG + E +REYFG
Sbjct: 93 -------PIGKPPHLRV-KKIFVGGLKPETSDEKIREYFG 124
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L V GL ++TT+E++++YFS +G+L
Sbjct: 31 LFVGGLSYETTKESLKEYFSKYGEL 55
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+FVG + T E L+EYF +G++
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGEL 55
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRI-PNGKDGSSTAH 681
VQ+ D+ T SKG+GF++F E EA RA+ + + + ++I P + G S+A+
Sbjct: 271 VQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTERGDSSAY 327
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
++ RD+ TG SKGF FI FA ++A A+
Sbjct: 131 KIMRDSDTGNSKGFAFINFASFDASDAAI 159
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +1
Query: 430 RSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 609
R + L E S TR F+ ++ RD ++ SKG+GF+ F + ++A+
Sbjct: 218 RIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMRE 277
Query: 610 RHMI 621
+++
Sbjct: 278 MNVL 281
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSST 675
V++ RD +TG+ KGFG++ F +A + AL + + + + +R+ KD T
Sbjct: 85 VRLIRDRKTGIGKGFGYVLFESKDAVVFAL-KMNNAEFKGRKIRVFPSKDKPQT 137
>SB_38710| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-09)
Length = 435
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 215 NGLVLLALAYRHVLRHLAHRPTLTFHFLISFIYSHGFETLVKS 87
NG+VL + R V+ A + TLT HF+ S YS +LV +
Sbjct: 67 NGMVLYLVKQRPVVSRRAFQRTLTRHFIRSLAYSSLLSSLVST 109
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 31.9 bits (69), Expect = 0.59
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 526 RDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGR 630
+D ++G SK +GF+ F + EA +A+G + H I+G+
Sbjct: 95 KDLKSGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQ 130
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYE-AQLRALGRRHMIDGRWCDVRI 648
V +D T SKG+GF+ A + A+L +R MI+GR +V +
Sbjct: 41 VIKDRVTKKSKGYGFVTMATSDAAELACKNKRPMIEGRQANVNL 84
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/25 (36%), Positives = 20/25 (80%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L V G+P+++ ++A+R +F+ FG++
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEI 36
>SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1006
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +1
Query: 430 RSYSSRLTMEDDRRSCTRLLL-LLWRFVMVQVKRDTRTGLSKGFGFIK 570
R +RLT++ + ++ RLLL +L R+V +++K D +G+S+ F K
Sbjct: 361 RCIEARLTIQKENQNQERLLLSVLPRYVAMEMKDDIESGISQNSQFHK 408
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 386 AFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDL 508
+ P ++P R + L V GL K TE+ +RD+F FG+L
Sbjct: 291 SMPMLDTPTDRS-ITTLYVGGLEGKVTEQDLRDHFYQFGEL 330
>SB_51024| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-08)
Length = 342
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 215 NGLVLLALAYRHVLRHLAHRPTLTFHFLISFIYSHGFETLVKS 87
NG+VL + R V+ A + TLT HF+ S YS +LV +
Sbjct: 28 NGMVLYLVKQRPVVSRRALQRTLTRHFIRSLAYSSLLTSLVST 70
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 649 PNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
P K G + H +FVG EN+ LR+ F FG++
Sbjct: 447 PGMKRGDTNNHFHIFVGDLAENVDNALLRKTFEPFGEI 484
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +1
Query: 379 LVCLPTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGF 558
+V +P + S S+ T DD S T L + R V+V +D SKGF
Sbjct: 499 MVFVPEKLSKPTSRLYFWSFHEWSTFLDDIFSYTVPDLFVAR--EVRVVKDPAKNKSKGF 556
Query: 559 GFIKFAEYEAQLRAL 603
GF+ F E +A+
Sbjct: 557 GFVSFVRREDAAKAI 571
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 664 GSSTAHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
G RK+FVG +++ EDLR F FG ++
Sbjct: 208 GQHKDDRKLFVGMISKHAKEEDLRVMFSPFGTIE 241
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
KVFVG + A +L+++FG FG V
Sbjct: 80 KVFVGNIGFKVRARELKDFFGYFGDV 105
>SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 697 RRIPFDEPSTSRPCRS-GCE-HRTSARLSCV 611
RRIP +EP+ P R G E HRT A + CV
Sbjct: 144 RRIPREEPAPGLPLREMGSEIHRTGAFIDCV 174
>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 51 DLQNNILLIQELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTE 230
D++ L QEL + L+ + +EE+ Q ++K+TE V E E E + E
Sbjct: 477 DIKELTLKDQELDVTVELRGAEKQQLEEEILNQTHQITKLTEQVTGLETEIKEVRQQKDE 536
Query: 231 EDGSLLLS 254
+ L LS
Sbjct: 537 INVHLSLS 544
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 649 PNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
P+ ++G S+ +++ V DLR+ FGSFG +
Sbjct: 57 PSAENGDSSGPKRLHVTNIPFRFRDNDLRQMFGSFGVI 94
>SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)
Length = 1055
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 HVIRHIRHEYYKNFWLDLQNNILLIQELGLNQSLKAVR-VDKRDEE 137
H I+ +R + +W+D+ ++ ++E+ N S+KAVR D+ D E
Sbjct: 507 HNIKRVRSAEFW-YWVDINGYLVNMEEMKRNVSMKAVRNKDRMDVE 551
>SB_20194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 846
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 469 RSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGR 630
RS RL L W ++V+ +R R G + G ++ ++ LGRRH R
Sbjct: 717 RSPHRLQGLFWSGLVVEFERVLRQGSHRSTGTLRGRCHQRMQSRLGRRHQATTR 770
>SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 675 RRRAVLAVRDANIAPAPVYHVSAA*CTQLSFVLGEFDEAKTFG 547
RR+ +L+ D N AP P +S CT L E D++ FG
Sbjct: 328 RRQEILSCYDGNRAPRPSTALSTDKCTLAKKGLPERDQSAMFG 370
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
VQ+ RD +T +KG+G++KF + AL
Sbjct: 82 VQIVRDHKTRENKGYGYVKFHKSSTAAMAL 111
>SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)
Length = 631
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 87 GLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDG 239
GL Q V V +D E+E Q S S + E E + P E +EDG
Sbjct: 163 GLEQREDDVEVMDQDSEIEDQEGSESMDEDQGDEDEVEDEVPEEGDNDEDG 213
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
V V+V D TG +GFGF+ F E +A+
Sbjct: 31 VDVKVITDRETGRPRGFGFVTFGSKEEMEKAI 62
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 664 GSSTAHRKVFVGRCTENITAEDLREYFGSF 753
G + K+FVG E+ T E +R YF SF
Sbjct: 2 GDDSKLMKLFVGGLNEDTTEETVRAYFKSF 31
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 407 PPPRPRCSDLIVLGLPWKTT 466
P P RC L +L +PWK T
Sbjct: 914 PDPSARCDPLSILAVPWKWT 933
>SB_28489| Best HMM Match : SAB (HMM E-Value=6)
Length = 149
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 481 RLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWC 636
R L LLW+ +VQ+ + + A+ +AQ +RH I RWC
Sbjct: 78 RELKLLWKRRVVQILPIVIVAVGTVPAGLMLAQSQAQGPRSNKRHSIQRRWC 129
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 682 RKVFVGRCTENITAEDLREYFGSFGQVQ 765
R ++VG ENI ED+ ++F +G+V+
Sbjct: 6 RHLWVGNLPENIREEDIVKHFTRYGRVE 33
>SB_15552| Best HMM Match : SCP (HMM E-Value=3.6)
Length = 154
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 558 WLHQIRRVRSSTACIRPPTH 617
W+ Q+ + +SS AC PP H
Sbjct: 87 WIGQLGKYKSSGACTNPPAH 106
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = +3
Query: 66 ILLIQELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTE 230
++ + E+GL ++L +VR+D +DEE+ + + E V + + +E+ T+
Sbjct: 676 VMQVAEIGLAKAL-SVRLDSKDEEIAELQKKLDFAKEQVQALKNADVKTVEMETK 729
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,797,848
Number of Sequences: 59808
Number of extensions: 461323
Number of successful extensions: 1759
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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