Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0013
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 66 3e-11
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 54 1e-07
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 50 2e-06
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 50 2e-06
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 47 2e-05
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 47 2e-05
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 47 2e-05
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 47 2e-05
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 47 2e-05
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 47 2e-05
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 47 2e-05
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 45 5e-05
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 45 5e-05
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 45 5e-05
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 45 5e-05
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 45 5e-05
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 36 0.024
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 36 0.032
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 36 0.032
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 35 0.073
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 35 0.073
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 34 0.13
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 34 0.13
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 32 0.52
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 32 0.52
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 32 0.52
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 32 0.52
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 32 0.52
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 32 0.52
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z49910-6|CAH04715.1| 124|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 30 1.6
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 30 1.6
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 30 1.6
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 30 1.6
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 30 1.6
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 30 1.6
AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical ... 30 1.6
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 30 2.1
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 29 2.8
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 29 2.8
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 29 2.8
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 29 2.8
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 29 2.8
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 29 3.6
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 29 3.6
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 29 4.8
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 29 4.8
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 29 4.8
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 4.8
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 29 4.8
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 28 6.4
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 28 6.4
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 28 6.4
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 28 6.4
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr... 28 8.4
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik... 28 8.4
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 66.1 bits (154), Expect = 3e-11
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG-RRHMIDGRWCDVRIPNGKDGSS-TAH 681
V ++KR + G SKGFGF++ + Q + L +HMIDGR CDV++P+G+D +
Sbjct: 200 VFCEIKRKS-DGNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGRDKQGRPSI 258
Query: 682 RKVFVGRCTENITAEDLREYFG 747
++FVGR T+ + LR+ FG
Sbjct: 259 SRIFVGRLTDKVDEHQLRKVFG 280
Score = 31.9 bits (69), Expect = 0.52
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 431 DLIVLGLPWKTTEEAVRDYFSSFG 502
DLIVLG+ +KTT+E + YF G
Sbjct: 174 DLIVLGVDFKTTDECFQKYFEDIG 197
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 174 EYVPVSEGEQDEPIELPTEEDGSLLLSPWQRS 269
E++ V + DEPIELPT DG +L++ Q S
Sbjct: 46 EFITVQDPNGDEPIELPT-VDGVVLMTTLQAS 76
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCDVRIPNGKDGSS---TAHRK 687
V RD T ++GFGFI F + + + L R H +DG+ D ++ K + T +K
Sbjct: 76 VMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKK 135
Query: 688 VFVGRCTENITAEDLREYFGSFGQVQ 765
VF+G + T ED+++YF ++G+V+
Sbjct: 136 VFIGGLSATSTLEDMKQYFETYGKVE 161
Score = 35.5 bits (78), Expect = 0.042
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 652 NGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
+G GS K+F+G + TAE+LR+YFG FG+V
Sbjct: 36 DGSHGSQDPG-KMFIGGLSWQTTAENLRDYFGRFGEV 71
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
+ + GL W+TT E +RDYF FG++
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEV 71
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCDVRIPNGKDGSS---TAHRK 687
V RD T ++GFGFI F + + + L R H +DG+ D ++ K + T +K
Sbjct: 76 VMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKK 135
Query: 688 VFVGRCTENITAEDLREYFGSFGQVQ 765
VF+G + T ED+++YF ++G+V+
Sbjct: 136 VFIGGLSATSTLEDMKQYFETYGKVE 161
Score = 35.5 bits (78), Expect = 0.042
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 652 NGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
+G GS K+F+G + TAE+LR+YFG FG+V
Sbjct: 36 DGSHGSQDPG-KMFIGGLSWQTTAENLRDYFGRFGEV 71
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
+ + GL W+TT E +RDYF FG++
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEV 71
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEA-QLRALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVF 693
QVK D G S+GF F++F E +L R I G+ +V K S ++KVF
Sbjct: 59 QVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEV-----KPAKSRENKKVF 113
Query: 694 VGRCTENITAEDLREYFGSFGQV 762
VG + + +DLR +F FG+V
Sbjct: 114 VGGLPSDYSEQDLRSHFEQFGKV 136
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 619 IDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
I+G + NG +K+FVG + + EDL +F +G+V
Sbjct: 8 INGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEA-QLRALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVF 693
QVK D G S+GF F++F E +L R I G+ +V K S ++KVF
Sbjct: 59 QVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEV-----KPAKSRENKKVF 113
Query: 694 VGRCTENITAEDLREYFGSFGQV 762
VG + + +DLR +F FG+V
Sbjct: 114 VGGLPSDYSEQDLRSHFEQFGKV 136
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 619 IDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
I+G + NG +K+FVG + + EDL +F +G+V
Sbjct: 8 INGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
T ++ + ++ + + C RL + RD T SKG F+ F + +
Sbjct: 52 TDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIE 111
Query: 598 ALGRRH---MIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
A G H +I+G V++ D + RK+F+G+ ++ E+LRE F FG ++
Sbjct: 112 AQGALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGHIE 169
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
T ++ + ++ + + C RL + RD T SKG F+ F + +
Sbjct: 52 TDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIE 111
Query: 598 ALGRRH---MIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
A G H +I+G V++ D + RK+F+G+ ++ E+LRE F FG ++
Sbjct: 112 AQGALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGHIE 169
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
T ++ + ++ + + C RL + RD T SKG F+ F + +
Sbjct: 52 TDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIE 111
Query: 598 ALGRRH---MIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
A G H +I+G V++ D + RK+F+G+ ++ E+LRE F FG ++
Sbjct: 112 AQGALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGHIE 169
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
T ++ + ++ + + C RL + RD T SKG F+ F + +
Sbjct: 52 TDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIE 111
Query: 598 ALGRRH---MIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
A G H +I+G V++ D + RK+F+G+ ++ E+LRE F FG ++
Sbjct: 112 AQGALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGHIE 169
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
T ++ + ++ + + C RL + RD T SKG F+ F + +
Sbjct: 52 TDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIE 111
Query: 598 ALGRRH---MIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
A G H +I+G V++ D + RK+F+G+ ++ E+LRE F FG ++
Sbjct: 112 AQGALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGHIE 169
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
T ++ + ++ + + C RL + RD T SKG F+ F + +
Sbjct: 52 TDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIE 111
Query: 598 ALGRRH---MIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
A G H +I+G V++ D + RK+F+G+ ++ E+LRE F FG ++
Sbjct: 112 AQGALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGHIE 169
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
T ++ + ++ + + C RL + RD T SKG F+ F + +
Sbjct: 52 TDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIE 111
Query: 598 ALGRRH---MIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
A G H +I+G V++ D + RK+F+G+ ++ E+LRE F FG ++
Sbjct: 112 AQGALHNIKVIEGMHHPVQMKPA-DTENRNERKLFIGQLSKKHNEENLREIFAKFGHIE 169
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFA-EYEAQLRALGRRHMIDGRWCDVR--IP---NGKDGSSTAH 681
V RD T S+GFGF+ F+ + E R H+IDG+ D + +P + S+ +
Sbjct: 54 VMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVST 113
Query: 682 RKVFVGRCTENITAEDLREYFGSFGQV 762
++++V E+ T + L EYF +G V
Sbjct: 114 KRLYVSGVREDHTEDMLTEYFTKYGTV 140
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGRWCDVRIPNGKDGSSTA 678
D T +GFGF+ F ++++ + L + HM++G CDVR KD S A
Sbjct: 148 DKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKA 198
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 637 DVRIPNGKDGSSTAH---RKVFVGRCTENITAEDLREYFGSFGQV 762
+++ NG +S RK+FVG T N T + +RE++ FG++
Sbjct: 5 EIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEI 49
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFA-EYEAQLRALGRRHMIDGRWCDVR--IP---NGKDGSSTAH 681
V RD T S+GFGF+ F+ + E R H+IDG+ D + +P + S+ +
Sbjct: 16 VMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVST 75
Query: 682 RKVFVGRCTENITAEDLREYFGSFGQV 762
++++V E+ T + L EYF +G V
Sbjct: 76 KRLYVSGVREDHTEDMLTEYFTKYGTV 102
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGRWCDVRIPNGKDGSSTA 678
D T +GFGF+ F ++++ + L + HM++G CDVR KD S A
Sbjct: 110 DKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKA 160
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFA-EYEAQLRALGRRHMIDGRWCDVR--IP---NGKDGSSTAH 681
V RD T S+GFGF+ F+ + E R H+IDG+ D + +P + S+ +
Sbjct: 16 VMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVST 75
Query: 682 RKVFVGRCTENITAEDLREYFGSFGQV 762
++++V E+ T + L EYF +G V
Sbjct: 76 KRLYVSGVREDHTEDMLTEYFTKYGTV 102
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGRWCDVRIPNGKDGSSTA 678
D T +GFGF+ F ++++ + L + HM++G CDVR KD S A
Sbjct: 110 DKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKA 160
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFA-EYEAQLRALGRRHMIDGRWCDVR--IP---NGKDGSSTAH 681
V RD T S+GFGF+ F+ + E R H+IDG+ D + +P + S+ +
Sbjct: 54 VMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVST 113
Query: 682 RKVFVGRCTENITAEDLREYFGSFGQV 762
++++V E+ T + L EYF +G V
Sbjct: 114 KRLYVSGVREDHTEDMLTEYFTKYGTV 140
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGRWCDVRIPNGKDGSSTA 678
D T +GFGF+ F ++++ + L + HM++G CDVR KD S A
Sbjct: 148 DKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKA 198
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 637 DVRIPNGKDGSSTAH---RKVFVGRCTENITAEDLREYFGSFGQV 762
+++ NG +S RK+FVG T N T + +RE++ FG++
Sbjct: 5 EIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEI 49
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFA-EYEAQLRALGRRHMIDGRWCDVR--IP---NGKDGSSTAH 681
V RD T S+GFGF+ F+ + E R H+IDG+ D + +P + S+ +
Sbjct: 54 VMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVST 113
Query: 682 RKVFVGRCTENITAEDLREYFGSFGQV 762
++++V E+ T + L EYF +G V
Sbjct: 114 KRLYVSGVREDHTEDMLTEYFTKYGTV 140
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGRWCDVRIPNGKDGSSTA 678
D T +GFGF+ F ++++ + L + HM++G CDVR KD S A
Sbjct: 148 DKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKA 198
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 637 DVRIPNGKDGSSTAH---RKVFVGRCTENITAEDLREYFGSFGQV 762
+++ NG +S RK+FVG T N T + +RE++ FG++
Sbjct: 5 EIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEI 49
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 36.3 bits (80), Expect = 0.024
Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Frame = +1
Query: 391 PTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIK 570
P I + T ++ +Y + +++ RS L + ++ RD TG S G+GF+
Sbjct: 33 PNVDIGESKTNLIINYLPQGMTQEEVRS---LFTSIGEIESCKLVRDKVTGQSLGYGFVN 89
Query: 571 FAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAH-RKVFVGRCTENITAEDLREYFG 747
+ E LRA+ + + + +++ + + ++V +++T +L F
Sbjct: 90 YVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFR 149
Query: 748 SFGQV 762
FGQ+
Sbjct: 150 PFGQI 154
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 35.9 bits (79), Expect = 0.032
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 671 DEPSLPFGMRTSHQRPSIMCRRPNARS*ASYSANLMKPKPLDSP 540
+EP G++TS Q PS +RP+ A S+N++ P P +P
Sbjct: 1465 NEPDQTTGLKTSQQPPSFAAKRPSFGRQAQSSSNVIPPAPAPTP 1508
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 35.9 bits (79), Expect = 0.032
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 671 DEPSLPFGMRTSHQRPSIMCRRPNARS*ASYSANLMKPKPLDSP 540
+EP G++TS Q PS +RP+ A S+N++ P P +P
Sbjct: 1465 NEPDQTTGLKTSQQPPSFAAKRPSFGRQAQSSSNVIPPAPAPTP 1508
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 34.7 bits (76), Expect = 0.073
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 213 IELPTEEDGSLLLSPWQ-RSSQVPAA*STE*TGDYAAYASSTSACHHRRRAGRPTDIGVP 389
I++ T+ ++L SP+ RS + + S + +GD S+ C R+ + D G+P
Sbjct: 169 IDMSTDSANTILRSPYSTRSDSITSVDSGQCSGDQIERRSN---CSTRQESKDDDDTGMP 225
Query: 390 SHARNRRRLDH 422
S+AR +DH
Sbjct: 226 SYARMASTMDH 236
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 34.7 bits (76), Expect = 0.073
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +1
Query: 505 FVMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRW 633
F +V R++RT SKG+GF+ F + E +RA+ R M DG++
Sbjct: 229 FQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAM--REM-DGKY 268
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
++ RD +G SKGF FI FA +EA AL
Sbjct: 131 KIMRDVDSGTSKGFAFINFASFEASDTAL 159
Score = 31.1 bits (67), Expect = 0.90
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMID--GRWCDVRIPNGKDGSSTAH 681
V V + +D T +GFGF++F E A+ +MI G+ V + + +
Sbjct: 40 VSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVG 99
Query: 682 RKVFVGRCTENITAEDLREYFGSFGQV 762
+FVG + + L + F +FG +
Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVI 126
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
++ RD +G SKGF FI FA +EA AL
Sbjct: 141 KIMRDVDSGTSKGFAFINFASFEASDTAL 169
Score = 31.1 bits (67), Expect = 0.90
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMID--GRWCDVRIPNGKDGSSTAH 681
V V + +D T +GFGF++F E A+ +MI G+ V + + +
Sbjct: 50 VSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVG 109
Query: 682 RKVFVGRCTENITAEDLREYFGSFGQV 762
+FVG + + L + F +FG +
Sbjct: 110 ANIFVGNLDPEVDEKLLYDTFSAFGVI 136
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRW 633
+V RDT T SKG+GF+ + + E RA+ ++G+W
Sbjct: 52 KVIRDTNTTKSKGYGFVSYPKREEAERAI---EQMNGQW 87
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 670 STAHRKVFVGRCTENITAEDLREYFGSFGQV 762
+T H VFVG + + + LRE F FG V
Sbjct: 18 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDV 48
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRW 633
+V RDT T SKG+GF+ + + E RA+ ++G+W
Sbjct: 62 KVIRDTNTTKSKGYGFVSYPKREEAERAI---EQMNGQW 97
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 670 STAHRKVFVGRCTENITAEDLREYFGSFGQV 762
+T H VFVG + + + LRE F FG V
Sbjct: 28 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDV 58
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRW 633
+V RDT T SKG+GF+ + + E RA+ ++G+W
Sbjct: 165 KVIRDTNTTKSKGYGFVSYPKREEAERAI---EQMNGQW 200
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Frame = +1
Query: 541 GLSKGFGFIKFAEY---EAQLRALGRRHMIDGRW-CDVRIPNGKDGS---STAHRKVFVG 699
G + + F++F+++ L+ + +R ++D + + G+ S +T H VFVG
Sbjct: 81 GSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVG 140
Query: 700 RCTENITAEDLREYFGSFGQV 762
+ + + LRE F FG V
Sbjct: 141 DLSSEVDNQKLREAFQPFGDV 161
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRW 633
+V RDT T SKG+GF+ + + E RA+ ++G+W
Sbjct: 133 KVIRDTNTTKSKGYGFVSYPKREEAERAI---EQMNGQW 168
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 670 STAHRKVFVGRCTENITAEDLREYFGSFGQV 762
+T H VFVG + + + LRE F FG V
Sbjct: 99 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDV 129
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR--HMIDGR 630
V + RD + SKGFGF++F E AL R ++DGR
Sbjct: 48 VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGR 88
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR--HMIDGR 630
V + RD + SKGFGF++F E AL R ++DGR
Sbjct: 48 VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGR 88
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 502 RFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
R + + + RD TGL KGF F+ F + RA+
Sbjct: 201 RVIRIFIARDKVTGLPKGFAFVTFESRDDAARAI 234
>Z49910-6|CAH04715.1| 124|Caenorhabditis elegans Hypothetical
protein F44G4.4b protein.
Length = 124
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 174 EYVPVSEGEQDEPIELPTEEDGSLLLSPWQRS 269
E++ V + DEPIELPT DG +L++ Q S
Sbjct: 46 EFITVQDPNGDEPIELPT-VDGVVLMTTLQAS 76
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAE-YEAQLRALGRRHMIDGRWCD 639
V RD T S+GFGF+ FA + A+ R H + G+ D
Sbjct: 80 VIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVD 120
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAE-YEAQLRALGRRHMIDGRWCD 639
V RD T S+GFGF+ FA + A+ R H + G+ D
Sbjct: 100 VIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVD 140
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAE-YEAQLRALGRRHMIDGRWCD 639
V RD T S+GFGF+ FA + A+ R H + G+ D
Sbjct: 101 VIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVD 141
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
+ V GLP+ T+++ + +YF FGD+
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDI 61
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 446 GLPWKTTEEAVRDYFSSFG 502
GLPW+ TE+ +RD+F + G
Sbjct: 11 GLPWEATEQELRDFFGNNG 29
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 446 GLPWKTTEEAVRDYFSSFG 502
GLPW+ TE+ +RD+F + G
Sbjct: 11 GLPWEATEQELRDFFGNNG 29
>AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical
protein Y75B7AL.4a protein.
Length = 1126
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -3
Query: 737 SLRSSAVIFSVQRPTNTFR*AVDEPSLPFGMRTSHQRPSIMCRRPN 600
S RSS F + TN R A DE +LP + RPS+ R N
Sbjct: 983 SPRSSTDYFEFGKYTNALRSATDEFALPTRKTSVESRPSVAILRSN 1028
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 622 DGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFG 756
D W +P S T RK+FVG +IT L++ FG FG
Sbjct: 276 DATWFG-ELPPRDYTSPTFSRKIFVGGVPWDITEAALKDSFGEFG 319
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 392 PRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFG 502
PR + P R + V G+PW TE A++D F FG
Sbjct: 285 PRDYTSPTFSR--KIFVGGVPWDITEAALKDSFGEFG 319
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 29.5 bits (63), Expect = 2.8
Identities = 7/27 (25%), Positives = 19/27 (70%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQVQ 765
++++GR T ++ +D+ +F +GQ++
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIR 30
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 29.5 bits (63), Expect = 2.8
Identities = 7/27 (25%), Positives = 19/27 (70%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQVQ 765
++++GR T ++ +D+ +F +GQ++
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIR 30
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 29.5 bits (63), Expect = 2.8
Identities = 7/27 (25%), Positives = 19/27 (70%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQVQ 765
++++GR T ++ +D+ +F +GQ++
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIR 30
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 29.5 bits (63), Expect = 2.8
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Frame = +1
Query: 541 GLSKGFGFIKFAEYEAQLRAL---GRRHMIDGR----WC-DVRIP--NGKDGSSTAHRKV 690
GL+ + F++F+++ AL R +++ W + R P N ++ H V
Sbjct: 75 GLNDPYAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHV 134
Query: 691 FVGRCTENITAEDLREYFGSFGQV 762
FVG I + LRE F FG+V
Sbjct: 135 FVGDLCSEIDSTKLREAFVKFGEV 158
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 679 HRKVFVGRCTENITAEDLREYFGSFGQV 762
HR VF+G +TAE++ + F FG V
Sbjct: 318 HRTVFLGGLPRIVTAEEIAQMFSEFGVV 345
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 679 HRKVFVGRCTENITAEDLREYFGSFGQV 762
HR VF+G +TAE++ + F FG V
Sbjct: 318 HRTVFLGGLPRIVTAEEIAQMFSEFGVV 345
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 679 HRKVFVGRCTENITAEDLREYFGSFGQV 762
HR VF+G +TAE++ + F FG V
Sbjct: 104 HRTVFLGGLPRIVTAEEIAQMFSEFGVV 131
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 679 HRKVFVGRCTENITAEDLREYFGSFGQV 762
HR VF+G +TAE++ + F FG V
Sbjct: 318 HRTVFLGGLPRIVTAEEIAQMFSEFGVV 345
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+FVG+ N+ +DLR F FG++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKI 55
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRI--------PNGKDG-- 666
+V RD +T SKG+GF+ F + A+ ++G+W R N ++
Sbjct: 165 KVIRDVQTQKSKGYGFVSFPNKQNAENAIAG---MNGKWIGKRAVRTNWAARKNSEENRD 221
Query: 667 --------SSTA--HRKVFVGRCTENITAEDLREYFGSFGQV 762
+ST + V+VG ++ T DLR+ F ++G +
Sbjct: 222 KLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFSTYGDI 263
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCDV 642
D TGL +GF I F + +A+ +R H+IDG DV
Sbjct: 59 DPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGDRVDV 97
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+FVG+ N+ +DLR F FG++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKI 55
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 39 NFWLDLQNNILLIQELGLNQSLKAVRVDKRDE 134
++WL+L+ N+ +IQEL NQ + + +R+E
Sbjct: 323 HWWLNLEENMPVIQELPENQIIDHTPLTEREE 354
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 39 NFWLDLQNNILLIQELGLNQSLKAVRVDKRDE 134
++WL+L+ N+ +IQEL NQ + + +R+E
Sbjct: 323 HWWLNLEENMPVIQELPENQIIDHTPLTEREE 354
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 28.7 bits (61), Expect = 4.8
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 9/143 (6%)
Frame = +1
Query: 361 LAGLPILVCLPTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRT 540
L G P+ + R A + + L D +S L + +V D
Sbjct: 98 LHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-ED 156
Query: 541 GLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWCDV-----RIPNGKDGSSTAHR--KVF 693
G SKG+GF+ F EA A+ + + ++ G+ V R ++ TA + V+
Sbjct: 157 GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVY 216
Query: 694 VGRCTENITAEDLREYFGSFGQV 762
V ++ E L + F FG +
Sbjct: 217 VKNFGDHYNKETLEKVFAKFGNI 239
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 28.7 bits (61), Expect = 4.8
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 9/143 (6%)
Frame = +1
Query: 361 LAGLPILVCLPTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRT 540
L G P+ + R A + + L D +S L + +V D
Sbjct: 35 LHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-ED 93
Query: 541 GLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWCDV-----RIPNGKDGSSTAHR--KVF 693
G SKG+GF+ F EA A+ + + ++ G+ V R ++ TA + V+
Sbjct: 94 GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVY 153
Query: 694 VGRCTENITAEDLREYFGSFGQV 762
V ++ E L + F FG +
Sbjct: 154 VKNFGDHYNKETLEKLFAKFGNI 176
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 28.7 bits (61), Expect = 4.8
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 9/143 (6%)
Frame = +1
Query: 361 LAGLPILVCLPTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRT 540
L G P+ + R A + + L D +S L + +V D
Sbjct: 98 LHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-ED 156
Query: 541 GLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWCDV-----RIPNGKDGSSTAHR--KVF 693
G SKG+GF+ F EA A+ + + ++ G+ V R ++ TA + V+
Sbjct: 157 GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVY 216
Query: 694 VGRCTENITAEDLREYFGSFGQV 762
V ++ E L + F FG +
Sbjct: 217 VKNFGDHYNKETLEKLFAKFGNI 239
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
V++ D TG +GF FI+FAE + RA+
Sbjct: 34 VRIVCDRETGRPRGFAFIEFAEEGSAQRAV 63
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 612 THDRRALVRCSHPERQGRLVDGSSKGIRRPLYG 710
T D + + C +P+ R+VD S +R+ +YG
Sbjct: 2233 TTDSKFIFACGYPDYSFRIVDTDSGRVRQAVYG 2265
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 612 THDRRALVRCSHPERQGRLVDGSSKGIRRPLYG 710
T D + + C +P+ R+VD S +R+ +YG
Sbjct: 2233 TTDSKFIFACGYPDYSFRIVDTDSGRVRQAVYG 2265
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 28.3 bits (60), Expect = 6.4
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +1
Query: 370 LPILVCLPTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLS 549
+PI V TR AS T R Y S + + + R + V++ + R S
Sbjct: 34 MPISVKPKTR--EPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRG--S 89
Query: 550 KGFGFIKFAEYEA--QLRALGRRHMIDGRWCDVR 645
KGFGF+ E+ + RA + GR +VR
Sbjct: 90 KGFGFVTLDSIESCEKARAALHESHVQGRIIEVR 123
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 28.3 bits (60), Expect = 6.4
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +1
Query: 370 LPILVCLPTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLS 549
+PI V TR AS T R Y S + + + R + V++ + R S
Sbjct: 34 MPISVKPKTR--EPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRG--S 89
Query: 550 KGFGFIKFAEYEA--QLRALGRRHMIDGRWCDVR 645
KGFGF+ E+ + RA + GR +VR
Sbjct: 90 KGFGFVTLDSIESCEKARAALHESHVQGRIIEVR 123
>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical protein
F01G4.1 protein.
Length = 1474
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 54 LQNNILLIQELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEE 233
++ IL LN K ++ K D+ G +M E + ++GE++E E+P +E
Sbjct: 980 VEEKILAAARYKLNVDEKVIQAGKFDQRSTGAERK--QMLEQIIQADGEEEEEEEVPDDE 1037
>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical protein
F01G4.1 protein.
Length = 1474
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 54 LQNNILLIQELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEE 233
++ IL LN K ++ K D+ G +M E + ++GE++E E+P +E
Sbjct: 980 VEEKILAAARYKLNVDEKVIQAGKFDQRSTGAERK--QMLEQIIQADGEEEEEEEVPDDE 1037
>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
protein protein.
Length = 1474
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 54 LQNNILLIQELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEE 233
++ IL LN K ++ K D+ G +M E + ++GE++E E+P +E
Sbjct: 980 VEEKILAAARYKLNVDEKVIQAGKFDQRSTGAERK--QMLEQIIQADGEEEEEEEVPDDE 1037
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,726,275
Number of Sequences: 27780
Number of extensions: 324137
Number of successful extensions: 1323
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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