Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0013
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.5  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 388 GTPISVGRPA 359
           GTPIS GRPA
Sbjct: 371 GTPISTGRPA 380


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 388 GTPISVGRPA 359
           GTPIS GRPA
Sbjct: 371 GTPISTGRPA 380


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 388 GTPISVGRPA 359
           GTPIS GRPA
Sbjct: 371 GTPISTGRPA 380


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 388 GTPISVGRPA 359
           GTPIS GRPA
Sbjct: 371 GTPISTGRPA 380


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 388 GTPISVGRPA 359
           GTPIS GRPA
Sbjct: 371 GTPISTGRPA 380


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 388 GTPISVGRPA 359
           GTPIS GRPA
Sbjct: 371 GTPISTGRPA 380


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 388 GTPISVGRPA 359
           GTPIS GRPA
Sbjct: 439 GTPISTGRPA 448


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 388 GTPISVGRPA 359
           GTPIS GRPA
Sbjct: 439 GTPISTGRPA 448


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 660 GRLVDGSSKGIRRPLYGEY 716
           G +++GSS  I    YG Y
Sbjct: 365 GNVIEGSSDSINTKFYGMY 383


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +3

Query: 192  EGEQDEPIELPTEEDGSLLLSPWQRSSQ-VPAA*STE*TGDYAAYASSTSACHHRRRAGR 368
            EGEQ +P+   T  D  ++  P   S    P   + E T   A   S T      R AGR
Sbjct: 1126 EGEQKDPVIFSTSFDSKVMTRPDTDSENWTPKMMAVEPTDKQA--NSKTRRQEMMREAGR 1183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,263
Number of Sequences: 438
Number of extensions: 3875
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)