Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0013
(769 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 58 9e-09
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 58 9e-09
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 52 4e-07
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 51 7e-07
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 48 9e-06
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 48 9e-06
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 48 9e-06
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 48 9e-06
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 47 2e-05
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 47 2e-05
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 47 2e-05
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 47 2e-05
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 3e-05
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 45 6e-05
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 45 6e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 44 1e-04
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 4e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 41 0.001
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 40 0.002
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 38 0.006
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 38 0.006
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 38 0.006
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 38 0.006
At5g51300.2 68418.m06360 splicing factor-related contains simila... 38 0.007
At5g51300.1 68418.m06359 splicing factor-related contains simila... 38 0.007
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 37 0.013
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 37 0.017
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 36 0.022
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 36 0.030
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.039
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 35 0.052
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 35 0.052
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 35 0.052
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 35 0.052
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 35 0.052
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 34 0.091
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 34 0.091
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 34 0.091
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 33 0.16
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 33 0.21
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 33 0.21
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 33 0.21
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 33 0.21
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 33 0.28
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 33 0.28
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.28
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 32 0.37
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 32 0.37
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 32 0.48
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 32 0.48
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 32 0.48
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 32 0.48
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 32 0.48
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 31 0.64
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 31 0.64
At4g21930.1 68417.m03172 expressed protein contains Pfam profile... 31 0.85
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 31 0.85
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 31 0.85
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 31 0.85
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 31 0.85
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 30 1.5
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 30 1.5
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 30 2.0
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 30 2.0
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 30 2.0
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 30 2.0
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 30 2.0
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 30 2.0
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 30 2.0
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 30 2.0
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 29 2.6
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 29 2.6
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 29 2.6
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 29 2.6
At1g68150.1 68414.m07785 WRKY family transcription factor simila... 29 2.6
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 29 2.6
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 29 3.4
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 29 3.4
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 29 3.4
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 3.4
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 29 3.4
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 29 3.4
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 29 3.4
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 29 3.4
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 29 3.4
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 29 4.5
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 29 4.5
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 4.5
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 29 4.5
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 28 6.0
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 28 6.0
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 28 6.0
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 28 6.0
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 28 6.0
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 28 7.9
At4g17950.1 68417.m02673 DNA-binding family protein contains Pfa... 28 7.9
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 28 7.9
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 28 7.9
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 28 7.9
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 28 7.9
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 28 7.9
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 28 7.9
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 7.9
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 57.6 bits (133), Expect = 9e-09
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPNGKDGSSTAH---R 684
+ RD TG +GFGFI FA+ + + H+I+G+ +++ IP G G+ + +
Sbjct: 50 IMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTK 109
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+FVG +T ++L+++F +G V
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNV 135
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVFV 696
QV RD T S+GFGF+ F E L + +MID V I + S
Sbjct: 139 QVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSY 198
Query: 697 GRCTENITAED-LREYFGSFG 756
G ++ D Y G +G
Sbjct: 199 GSHPRGRSSNDSYASYGGPYG 219
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 57.6 bits (133), Expect = 9e-09
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPNGKDGSSTAH---R 684
+ RD TG +GFGFI FA+ + + H+I+G+ +++ IP G G+ + +
Sbjct: 50 IMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTK 109
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+FVG +T ++L+++F +G V
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNV 135
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMID 624
QV RD T S+GFGF+ F E L + +MID
Sbjct: 139 QVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMID 174
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHRKV--- 690
V +D TG S+GFG++ FA E AL H + R +V++ K+ +KV
Sbjct: 34 VMKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRILEVKVATPKEEMRQPAKKVTRI 93
Query: 691 FVGRCTENITAEDLREYFGSFGQV 762
FV R +++ D R +F +G++
Sbjct: 94 FVARIPSSVSESDFRSHFERYGEI 117
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQVQ 765
K+FVGR + + +DLR+YFG FG +Q
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQ 267
Score = 37.1 bits (82), Expect = 0.013
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L+VLG+PW + ++DY S FGDL
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDL 29
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVFVG 699
+ +D + +GFGF+ FAE R R H I G+ +V I S+T +
Sbjct: 271 IPKDPKRSGHRGFGFVTFAENGVADRVARRSHEICGQ--EVAI-----DSATPLDEAGPS 323
Query: 700 RCTENITAEDLREYFGSFG 756
++ + EYFG +G
Sbjct: 324 AGASSMLSSSRPEYFGGYG 342
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/85 (27%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPNGKDGSST-AHRKV 690
+ +D +TG +GFGF+ +A+ + + H+I G+ +++ IP G S+ +K+
Sbjct: 73 IMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKI 132
Query: 691 FVGRCTENITAEDLREYFGSFGQVQ 765
FVG ++ ++ +E+F FG+++
Sbjct: 133 FVGGIPSSVDDDEFKEFFMQFGELK 157
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEA--QLRALGRRHMIDGRWCDVRIPNGKDGSS 672
Q+ RD TG S+GFGF+ + + L A G R + G +++ K +S
Sbjct: 160 QIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNS 213
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 47.6 bits (108), Expect = 9e-06
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 19/100 (19%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPNG-----KDGSSTA 678
+ RD TG ++GFGFI FA+ R + +H+IDGR + + +P K +S
Sbjct: 37 IMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPI 96
Query: 679 H------------RKVFVGRCTENITAEDLREYFGSFGQV 762
H +K+FVG +IT E+ + YF FG +
Sbjct: 97 HLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTI 136
Score = 35.9 bits (79), Expect = 0.030
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + G+ W T EE +RDYFS++GD+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDV 32
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 422 RCSDLIVLGLPWKTTEEAVRDYFSSFGDL 508
R + V GLP TEE ++YF FG +
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTI 136
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 47.6 bits (108), Expect = 9e-06
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 19/100 (19%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPNG-----KDGSSTA 678
+ RD TG ++GFGFI FA+ R + +H+IDGR + + +P K +S
Sbjct: 37 IMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPI 96
Query: 679 H------------RKVFVGRCTENITAEDLREYFGSFGQV 762
H +K+FVG +IT E+ + YF FG +
Sbjct: 97 HLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTI 136
Score = 35.9 bits (79), Expect = 0.030
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + G+ W T EE +RDYFS++GD+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDV 32
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 422 RCSDLIVLGLPWKTTEEAVRDYFSSFGDL 508
R + V GLP TEE ++YF FG +
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTI 136
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 47.6 bits (108), Expect = 9e-06
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 19/100 (19%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPNG-----KDGSSTA 678
+ RD TG ++GFGFI FA+ R + +H+IDGR + + +P K +S
Sbjct: 37 IMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPI 96
Query: 679 H------------RKVFVGRCTENITAEDLREYFGSFGQV 762
H +K+FVG +IT E+ + YF FG +
Sbjct: 97 HLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTI 136
Score = 35.9 bits (79), Expect = 0.030
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + G+ W T EE +RDYFS++GD+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDV 32
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 422 RCSDLIVLGLPWKTTEEAVRDYFSSFGDL 508
R + V GLP TEE ++YF FG +
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTI 136
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 47.6 bits (108), Expect = 9e-06
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPNG-KDGSSTA---H 681
+ D TG +GFGF+ FA+ + L H+ID R D++ +P G KD A
Sbjct: 97 IMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKT 156
Query: 682 RKVFVGRCTENITAEDLREYFGSFGQV 762
RK+FVG + ++L+ YF +G +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDI 183
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 667 SSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
S ++ K+FVG + TAE YFG FG+V
Sbjct: 61 SMSSPGKLFVGGVSWETTAETFANYFGKFGEV 92
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L V G+ W+TT E +YF FG++
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEV 92
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPN------GKDGSS- 672
+ +D TG ++GFGF+ FA+ R + +H+IDG+ + + +P K SS
Sbjct: 37 IMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSL 96
Query: 673 ------TAHRKVFVGRCTENITAEDLREYFGSFGQV 762
+ +K+FVG ++T + ++YF FG +
Sbjct: 97 QGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMI 132
Score = 35.1 bits (77), Expect = 0.052
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + G+ W+T+E+ +RDYF SFG++
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEV 32
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCDVRIPNGKD-GSSTAHRK 687
V V D RT +GFGFI + EA + L + H ++G+ +V++ KD +T +
Sbjct: 135 VVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQ 194
Query: 688 VFVGRCTENITAEDLREYFGSF 753
+ V + + L EY F
Sbjct: 195 MNVNSFGTSRISSLLNEYTQGF 216
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+F+G + + + LR+YF SFG+V
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEV 32
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPN------GKDGSS- 672
+ +D TG ++GFGF+ FA+ R + +H+IDG+ + + +P K SS
Sbjct: 37 IMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSL 96
Query: 673 ------TAHRKVFVGRCTENITAEDLREYFGSFGQV 762
+ +K+FVG ++T + ++YF FG +
Sbjct: 97 QGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMI 132
Score = 35.1 bits (77), Expect = 0.052
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + G+ W+T+E+ +RDYF SFG++
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEV 32
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCDVRIPNGKD-GSSTAHRK 687
V V D RT +GFGFI + EA + L + H ++G+ +V++ KD +T +
Sbjct: 135 VVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQ 194
Query: 688 VFVGRCTENITAEDLREYFGSF 753
+ V + + L EY F
Sbjct: 195 MNVNSFGTSRISSLLNEYTQGF 216
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+F+G + + + LR+YF SFG+V
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEV 32
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 22/103 (21%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IP-------------- 651
+ RD TG ++GFGFI FA+ R + +H+IDGR + + +P
Sbjct: 46 IMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPM 105
Query: 652 ------NGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
+G +G +K+FVG +IT + + YF FG +
Sbjct: 106 HLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTI 148
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + G+ W T EE +++YF +GDL
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDL 41
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCDVRIPNGKD-GSSTAHRK 687
V V D T +GFGFI F E+ L + H ++G+ +V+ K+ S+T +R
Sbjct: 151 VVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRS 210
Query: 688 VFVG 699
+G
Sbjct: 211 PLIG 214
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 46.8 bits (106), Expect = 2e-05
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 19/104 (18%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--------IPNGKD 663
+ V V R+ TG +GFGF+ F++ R L +H ID R DV+ P G+
Sbjct: 33 LQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAMSREEQSPAGRS 92
Query: 664 GSSTAHR-----------KVFVGRCTENITAEDLREYFGSFGQV 762
G+ A R K+FVG +T+++ R YF ++G V
Sbjct: 93 GTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPV 136
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + G+ W T E +R+YFS+FG++
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEV 32
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 33.5 bits (73), Expect(2) = 3e-05
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 645
V ++ TG +GFGF++FA ++AL H I G+ DVR
Sbjct: 37 VAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVR 78
Score = 31.9 bits (69), Expect(2) = 3e-05
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 661 DGSSTAHRKVFVGRCTENITAEDLREYFGSFGQ 759
+G ++ +K+FVG + N T E+ + YF FG+
Sbjct: 113 NGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGR 145
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IP-------------- 651
+ +D TG ++GFGF+ FA+ + +H IDGR + + +P
Sbjct: 37 ILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSS 96
Query: 652 -NGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFG 756
G G RK+FVG ++T D + YF FG
Sbjct: 97 IQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFG 132
Score = 34.3 bits (75), Expect = 0.091
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + G+ W T EE +++YFSSFG++
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEV 32
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+F+G + + E L+EYF SFG+V
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEV 32
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IP-------------- 651
+ +D TG ++GFGF+ FA+ + +H IDGR + + +P
Sbjct: 37 ILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSS 96
Query: 652 -NGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFG 756
G G RK+FVG ++T D + YF FG
Sbjct: 97 IQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFG 132
Score = 34.3 bits (75), Expect = 0.091
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + G+ W T EE +++YFSSFG++
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEV 32
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+F+G + + E L+EYF SFG+V
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEV 32
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 22/104 (21%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR----------------- 645
+V D TG SKG+GF++FA+ Q+RA+ ++G++C R
Sbjct: 204 KVVNDRTTGRSKGYGFVRFADESEQIRAMTE---MNGQYCSSRPMRTGPAANKKPLTMQP 260
Query: 646 ----IPNGKDG-SSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
G G S + +FVG +++T +DL+ FG FG++
Sbjct: 261 ASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGEL 304
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 43.6 bits (98), Expect = 1e-04
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Frame = +1
Query: 520 VKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIP--------NGKDGSST 675
V RD TG +GFGF+ F++ R L +H ID R DV+ +G+ G+
Sbjct: 37 VMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLN 96
Query: 676 AHR-----------KVFVGRCTENITAEDLREYFGSFGQV 762
R K+FVG +T E+ R+YF +G V
Sbjct: 97 TSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPV 136
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 31.9 bits (69), Expect(2) = 4e-04
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 645
D+ TG SKG+GF++F + + RA+ ++G +C R
Sbjct: 248 DSNTGRSKGYGFVRFGDENERSRAMTE---MNGAFCSSR 283
Score = 29.5 bits (63), Expect(2) = 4e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 661 DGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
DG S + +FVG ++T EDL + F FG+V
Sbjct: 321 DGESN-NSTIFVGGLDADVTEEDLMQPFSDFGEV 353
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
T + + + L E R + R V V D TG SKG+GF+ F E EA +R
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMR 78
Query: 598 ALGRRH-MIDGR 630
A + +IDGR
Sbjct: 79 ACQNMNPVIDGR 90
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 23/105 (21%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR------------IP--- 651
+V D TG SKG+GF++FA+ Q+RA+ ++G++C R +P
Sbjct: 185 KVVLDRTTGRSKGYGFVRFADENEQMRAMTE---MNGQYCSTRPMRIGPAANKNALPMQP 241
Query: 652 ---NGKDGSSTA-----HRKVFVGRCTENITAEDLREYFGSFGQV 762
G++ + +FVG N+T ++L+ FG FG++
Sbjct: 242 AMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL 286
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 38.3 bits (85), Expect = 0.006
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFA---EYEAQLRALGRRHMIDGRW--CDVRIPNG-KDGSST 675
V + +D RTG +G F+K+A + + +RAL + + G VR +G ++ T
Sbjct: 149 VALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGT 208
Query: 676 AHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
K+FVG + T +++ E F FG V+
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGHVE 238
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 661 DGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
D SST K+FVG T E++R YF G V
Sbjct: 115 DRSSTV--KLFVGSVPRTATEEEIRPYFEQHGNV 146
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 38.3 bits (85), Expect = 0.006
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFA---EYEAQLRALGRRHMIDGRW--CDVRIPNG-KDGSST 675
V + +D RTG +G F+K+A + + +RAL + + G VR +G ++ T
Sbjct: 149 VALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGT 208
Query: 676 AHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
K+FVG + T +++ E F FG V+
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGHVE 238
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 661 DGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
D SST K+FVG T E++R YF G V
Sbjct: 115 DRSSTV--KLFVGSVPRTATEEEIRPYFEQHGNV 146
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGR-RHMIDGRWCDVRI-PNGKDGSST-----AHRK 687
D TG SKG+GF+ F + L AL IDGR ++ +G G+ + + RK
Sbjct: 109 DKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRK 168
Query: 688 VFVGRCTENITAEDLREYFGSFGQVQ 765
++V ++ A+ L +F ++G V+
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVE 194
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + GL TT E +R FSS+GDL
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDL 101
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGR-RHMIDGRWCDVRI-PNGKDGSST-----AHRK 687
D TG SKG+GF+ F + L AL IDGR ++ +G G+ + + RK
Sbjct: 109 DKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRK 168
Query: 688 VFVGRCTENITAEDLREYFGSFGQVQ 765
++V ++ A+ L +F ++G V+
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVE 194
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + GL TT E +R FSS+GDL
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDL 101
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 454 MEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG--RRHMIDG 627
+EDD L VM +V +D TGLSKG+GF+K+A+ + A+ + +G
Sbjct: 491 LEDD--GLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEG 548
Query: 628 RWCDVRI 648
R VRI
Sbjct: 549 RTLAVRI 555
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 454 MEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG--RRHMIDG 627
+EDD L VM +V +D TGLSKG+GF+K+A+ + A+ + +G
Sbjct: 491 LEDD--GLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEG 548
Query: 628 RWCDVRI 648
R VRI
Sbjct: 549 RTLAVRI 555
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
T + + + LT R + V V +T G SKG+GFI F +Y + +R
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR 68
Query: 598 AL-GRRHMIDGR 630
AL + +IDGR
Sbjct: 69 ALQNSKPIIDGR 80
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+FVG T TA+DLR YF FGQV
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQV 38
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 645
+V D TG SKG+GF+KFAE + RA+ ++G +C R
Sbjct: 147 KVVTDPSTGRSKGYGFVKFAEESERNRAMAE---MNGLYCSTR 186
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 36.3 bits (80), Expect = 0.022
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 4/138 (2%)
Frame = +1
Query: 361 LAGLPILVCLPTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRT 540
L G P+ + R + + + L D + + + + +V RD +
Sbjct: 9 LKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-S 67
Query: 541 GLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWCDVR--IPNGKDGSSTAHRKVFVGRCT 708
G+SKG+GF++F + A + +I + V + G+ S V+V
Sbjct: 68 GVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLV 127
Query: 709 ENITAEDLREYFGSFGQV 762
E T DL+ FG FG++
Sbjct: 128 ETATDADLKRLFGEFGEI 145
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL-GRRHMIDGRWCDVRI 648
V +V D T SKGFGF+ F E E+ RA H IDGR + ++
Sbjct: 36 VYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKL 83
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 413 PRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDL*WFK 520
P R + + V GLPW T E + YF FG++ + K
Sbjct: 4 PNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAK 39
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 35.5 bits (78), Expect = 0.039
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +1
Query: 511 MVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
+VQV RD TGL KGFGF++FA E AL
Sbjct: 313 LVQVPRD-ETGLCKGFGFVQFARLEDARNAL 342
Score = 31.1 bits (67), Expect = 0.85
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 682 RKVFVGRCTENITAEDLREYFGSFGQVQM 768
R+++VG N++ +DLR+ F SFG V++
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVEL 313
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.1 bits (77), Expect = 0.052
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALG--RRHMIDGRWCDVRIPNGKDGSSTAHRK 687
V++ ++ +T SKG F++FA E RA+ + MI+G+ C V D
Sbjct: 243 VRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDND-------T 295
Query: 688 VFVGRCTENITAEDLREYFGSFGQVQM 768
+FVG + T E LRE +G M
Sbjct: 296 LFVGNICKIWTPEALREKLKHYGVENM 322
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 35.1 bits (77), Expect = 0.052
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRI---------------- 648
+V D TG SKG+GF++F + + +A+ + + +RI
Sbjct: 230 KVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGG 289
Query: 649 --PNG---KDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
P+G + T + +FVG ++T EDL++ F FG++
Sbjct: 290 YMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEI 332
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 35.1 bits (77), Expect = 0.052
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 400 GIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAE 579
GI TT + + L E + + + + V D +G SKG+GF+ F E
Sbjct: 4 GIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
Query: 580 YEAQLRA-LGRRHMIDGR 630
EA A + +IDGR
Sbjct: 64 AEAARSACVDATPVIDGR 81
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 35.1 bits (77), Expect = 0.052
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 400 GIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAE 579
GI TT + + L E + + + + V D +G SKG+GF+ F E
Sbjct: 4 GIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
Query: 580 YEAQLRA-LGRRHMIDGR 630
EA A + +IDGR
Sbjct: 64 AEAARSACVDATPVIDGR 81
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 35.1 bits (77), Expect = 0.052
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 400 GIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAE 579
GI TT + + L E + + + + V D +G SKG+GF+ F E
Sbjct: 4 GIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
Query: 580 YEAQLRA-LGRRHMIDGR 630
EA A + +IDGR
Sbjct: 64 AEAARSACVDATPVIDGR 81
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 34.3 bits (75), Expect = 0.091
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
TT + + L E R + + D TG SKG+GF+ F E ++ R
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Query: 598 ALGRRH-MIDGRWCDVRI 648
A+ + +IDGR + I
Sbjct: 74 AVADPNPVIDGRKANCNI 91
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 673 TAHRKVFVGRCTENITAEDLREYFGSFGQV 762
T + KVFVG +++R YF FG++
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEI 43
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 34.3 bits (75), Expect = 0.091
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
TT + + L E R + + D TG SKG+GF+ F E ++ R
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Query: 598 ALGRRH-MIDGRWCDVRI 648
A+ + +IDGR + I
Sbjct: 74 AVADPNPVIDGRKANCNI 91
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 673 TAHRKVFVGRCTENITAEDLREYFGSFGQV 762
T + KVFVG +++R YF FG++
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEI 43
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 34.3 bits (75), Expect = 0.091
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 21/103 (20%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRI---------------- 648
+V D TG SKG+GF++F + + +A+ + + +RI
Sbjct: 228 KVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGG 287
Query: 649 --PNG---KDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
PNG + + +FVG ++T EDL++ F FG++
Sbjct: 288 YMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEI 330
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
V V+V R+ GLS+G+GF++F ++ + L
Sbjct: 130 VSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Frame = +1
Query: 538 TGLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWCDV-----RIPNGKDGSSTAHRKVFV 696
+G SKG+GF+++ EA A+ + + +++ + V ++ G V+V
Sbjct: 169 SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYV 228
Query: 697 GRCTENITAEDLREYFGSFG 756
+E+++ E+L + FG FG
Sbjct: 229 KNLSESLSDEELNKVFGEFG 248
Score = 31.9 bits (69), Expect = 0.48
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHM--IDGRWCDVRIPNGKDGS--ST 675
V V+V RD T S G+G++ +A + RAL + ++GR V + + +D S +
Sbjct: 72 VSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRV-MYSVRDPSLRKS 130
Query: 676 AHRKVFVGRCTENITAEDLREYFGSFGQV 762
+F+ ++I + L E F +FG +
Sbjct: 131 GVGNIFIKNLDKSIDHKALHETFSAFGPI 159
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 609
V V D +TG+S+GFGF+ F E RA+ +
Sbjct: 242 VYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +1
Query: 505 FVMVQVKRDTRTGLSKGFGFIKF---AEYEAQLRALGRRHM 618
F M +V RD RTG +KG+GF+ F A+ A L+ + +++
Sbjct: 163 FNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYV 203
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGRWCDVRIPN-GKDGSST 675
D TG SKG+GF+ F + ++ RA+ + +IDGR + I + G+ ST
Sbjct: 51 DKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPST 101
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 673 TAHRKVFVGRCTENITAEDLREYFGSFGQV 762
T H KVFVG +++R YF FG++
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYFDQFGEI 43
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
+ V GL W+T + +R YF FG++
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEI 43
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
TT + + L E + R + V D TG SKG+GF+ F + EA R
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARR 80
Query: 598 A-LGRRHMIDGR 630
A + +IDGR
Sbjct: 81 ACVDPTPIIDGR 92
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 502 RFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR--RHMIDGRWCDVRIPNGKDGSST 675
+ V V + RD RTG S+GF F+++ + +A+ R ++DGR ++ + K G +
Sbjct: 41 KVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGR--EITVQFAKYGPNA 98
Query: 676 AHRKVFVGRCTE 711
K+ GR E
Sbjct: 99 --EKISKGRVVE 108
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 502 RFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR--RHMIDGRWCDVRIPNGKDGSST 675
+ V V + RD RTG S+GF F+++ + +A+ R ++DGR ++ + K G +
Sbjct: 41 KVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGR--EITVQFAKYGPNA 98
Query: 676 AHRKVFVGRCTE 711
K+ GR E
Sbjct: 99 --EKISKGRVVE 108
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 645
D+ TG SKG+GF++F + + RAL ++G +C R
Sbjct: 237 DSNTGRSKGYGFVRFGDENERSRALTE---MNGAYCSNR 272
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 661 DGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
DG ST + +FVG ++ EDLR+ F FG+V
Sbjct: 315 DGEST-NATIFVGGIDPDVIDEDLRQPFSQFGEV 347
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALG-RRHMIDGR 630
D TG SKG+GF+ F + EA RA +IDGR
Sbjct: 58 DKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGR 92
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Frame = +1
Query: 538 TGLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWCDV-----RIPNGKDGSSTAHR--KV 690
TG SKG+GF++F + E+ A+ + + +++ + V R +D ++ R V
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231
Query: 691 FVGRCTENITAEDLREYFGSFGQV 762
+V + I ++LR+ FG FG +
Sbjct: 232 YVKNLPKEIGEDELRKTFGKFGVI 255
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 541 GLSKGFGFIKFAEYEAQLRAL 603
G+S+GFGF+ ++ E LRAL
Sbjct: 369 GMSRGFGFVAYSNPEEALRAL 389
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCDVRIPNGKD-GSSTAHRK 687
V V D RT +GFGFI + EA + L + H ++G+ +V++ KD +T +
Sbjct: 62 VVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQ 121
Query: 688 VFVGRCTENITAEDLREYFGSF 753
+ V + + L EY F
Sbjct: 122 MNVNSFGTSRISSLLNEYTQGF 143
Score = 31.1 bits (67), Expect = 0.85
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 655 GKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
G G S + +K+FVG ++T + ++YF FG +
Sbjct: 25 GSPGPSNS-KKIFVGGLASSVTEAEFKKYFAQFGMI 59
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 428 SDLIVLGLPWKTTEEAVRDYFSSFGDL 508
S L + GL W E++++D FSSFG++
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEV 67
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +1
Query: 388 LPTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFI 567
LP +++++ + + L+ D +S V++ D +G S+GFGF+
Sbjct: 28 LPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFV 87
Query: 568 KFAEYEAQLRALGRRHMIDGR 630
FAE + AL + +DG+
Sbjct: 88 DFAE---EGDALSAKDAMDGK 105
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +2
Query: 392 PRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDL 508
P + S P+ + L V GL ++TTE+ +RD F FG+L
Sbjct: 68 PPSSSSGPKTK---LYVSGLSFRTTEDTLRDTFEQFGNL 103
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
TT + + L E + S V V D +G SKG+GF+ F + EA +
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Query: 598 A-LGRRHMIDGR 630
A + +IDGR
Sbjct: 64 ACVDPAPVIDGR 75
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
+ V GL W+T + ++R+YF FGD+
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDI 33
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 418 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 597
TT + + L E + S V V D +G SKG+GF+ F + EA +
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Query: 598 A-LGRRHMIDGR 630
A + +IDGR
Sbjct: 64 ACVDPAPVIDGR 75
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
+ V GL W+T + ++R+YF FGD+
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDI 33
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 31.5 bits (68), Expect = 0.64
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +1
Query: 391 PTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIK 570
P R A ST + S S+ T + R+ +V D +G SKGFGF++
Sbjct: 47 PARPQAEPSTNLFVSGLSKRTTSEGLRTA---FAQFGEVADAKVVTDRVSGYSKGFGFVR 103
Query: 571 FAEYEAQLRALGRRHMIDGRWCD 639
+A E + + +DG++ D
Sbjct: 104 YATLEDSAKGIAG---MDGKFLD 123
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 511 MVQVKRDTRTGLSKGFGFIKFAEYE 585
+VQ+ D TG KGFGFI+F + E
Sbjct: 293 LVQLPLDPETGQCKGFGFIQFVQLE 317
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 664 GSSTAHRKVFVGRCTENITAEDLREYFGSFGQVQM 768
G+ A RK++VG N++ LR+ F +FG V++
Sbjct: 259 GTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVEL 293
>At4g21930.1 68417.m03172 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584
Length = 183
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 306 GDYAAYASSTSACHHRRRAGRPTDIGVPSHARNRRRLDHDAPI 434
G + A + S RR+ GR +D+ VPS + +R + AP+
Sbjct: 55 GAWNARSLEASGSEWRRKGGRVSDLTVPSDGQRKRHVATSAPV 97
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 502 RFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 630
R +++ R TG S+G+GF+++ + LRA H +IDGR
Sbjct: 89 RIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGR 133
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
++ RD TG S+GFGFI + +EA A+
Sbjct: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAI 171
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRAL 603
D TG +KG+GF++F++ Q+RA+
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAM 214
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
V +V R+ +TG +G+GFI+FA + A R L
Sbjct: 89 VSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRAL 603
D TG +KG+GF++F++ Q+RA+
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAM 214
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
V +V R+ +TG +G+GFI+FA + A R L
Sbjct: 89 VSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGR 630
V +V D TG S+GFGF+ F EA A+ +DGR
Sbjct: 67 VDTRVILDRETGRSRGFGFVTFTSSEAASSAI---QALDGR 104
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 606
V+V R+ +TG SK FGFI+F + E A G
Sbjct: 89 VRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 119
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGR 609
D +T +S+GFGF+ F E RA+ +
Sbjct: 208 DQKTSMSRGFGFVSFVSREDAQRAINK 234
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH 615
Q+ + TG S+GFGFI FA+ A ++ H
Sbjct: 37 QIMLERDTGRSRGFGFITFADRRAMDESIREMH 69
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 645
+V D +TG S+GFGF+ F + A+ ++G+W R
Sbjct: 174 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINE---MNGKWLSSR 213
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
+ V GLPW+TT E + F +G++
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEI 130
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
+ V GLPW+TT E + F +G++
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEI 130
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 645
+V D +TG S+GFGF+ F + A+ ++G+W R
Sbjct: 182 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINE---MNGKWVSSR 221
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 645
+V D +TG S+GFGF+ F + A+ ++G+W R
Sbjct: 178 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINE---MNGKWVSSR 217
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
V V+V R+ GLS+G+GF++F ++ + L
Sbjct: 130 VSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRAL 603
+V D TG SKG+GF++F + + +A+
Sbjct: 228 KVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +1
Query: 430 RSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFA---EYEAQLRA 600
R Y L + D RL + V +V D TG S+GFGF++ + E + A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 601 LGRRHMIDGRWCDVRI 648
L ++ ++GR V +
Sbjct: 268 LDGQN-LEGRAIKVNV 282
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 436 YSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH 615
+ SRL+ +S +L + ++ RD+ T KGFGFI F + +AL
Sbjct: 10 FVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL---K 66
Query: 616 MIDGRWCDVRI 648
+DG+ D R+
Sbjct: 67 SLDGKIVDGRL 77
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +1
Query: 541 GLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWCDV-RIPNGKDGSSTAHRK----VFVG 699
G SKGFGF++F ++ + A H M+ G+ V + N + ++ A + V+V
Sbjct: 148 GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVK 207
Query: 700 RCTENITAEDLREYFGSFGQV 762
E +T + L F +G V
Sbjct: 208 NLIETVTDDCLHTLFSQYGTV 228
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 29.5 bits (63), Expect = 2.6
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Frame = +1
Query: 427 LRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFI---KFAEYEAQLR 597
L+ + L D +L MV+V D TG S+GFGF+ +E EA +
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150
Query: 598 ALGRRHMIDGRWCDVRI----PNGKDGSSTAHRKVF 693
+ +DGR V P +DG S R F
Sbjct: 151 QF-NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSF 185
>At1g68150.1 68414.m07785 WRKY family transcription factor similar
to DNA-binding protein ABF2 GI:1159879 from [Avena
fatua]
Length = 374
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +3
Query: 84 LGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSLL 248
+G++ SLK + +++ +E+EG + S + + G++DE + E+D S L
Sbjct: 27 MGIDLSLK-LEAEEKKKEIEGSKHSRENKEDEEHDASGDEDEQMVKEDEDDSSSL 80
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 645
+V D +TG S+GFGF+ F + A+ I G+W R
Sbjct: 169 RVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE---ITGKWLGSR 208
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 419 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDL 508
P S ++V LP+ T+E+ ++ FS+FG++
Sbjct: 37 PLASKIMVRNLPFSTSEDFLKREFSAFGEI 66
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + GL W T + ++RD F+ FGD+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDV 61
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGRR--HMIDGRWCDVRIPNGKDGSSTAH 681
D TG S+GFGF+ F + A A+ ++GR V N + + A+
Sbjct: 69 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPRAY 121
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L + GL W T + ++RD F+ FGD+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDV 61
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGRR--HMIDGRWCDVRIPNGKDGSSTAH 681
D TG S+GFGF+ F + A A+ ++GR V N + + A+
Sbjct: 69 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPRAY 121
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 422 RCSDLIVLGLPWKTTEEAVRDYFSSFGDL 508
+ + + V GL W T +EA+ D+F +GD+
Sbjct: 15 KLTKVFVGGLAWDTHKEAMYDHFIKYGDI 43
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 661 DGSSTAHRKVFVG-RCTENITAEDLREYFGSFGQVQ 765
D S++A +++++ + T ED+ YFG+FG VQ
Sbjct: 311 DKSNSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQ 346
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 361 LAGLPILVCLPTRGIAAAST-TMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTR 537
+AG L+ P+ + ST T R + S L+ + V +V D
Sbjct: 11 VAGSSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRD 70
Query: 538 TGLSKGFGFIKFAEYE 585
+G SKGFGF+ +A E
Sbjct: 71 SGRSKGFGFVTYATIE 86
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRAL-GRRHM-IDGRWCDVRIPNGK-DGSSTAHR 684
++ D TG S+GFGF+ F + +A A+ G +DGR V + G HR
Sbjct: 38 KIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHR 96
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 517 QVKRDTRTGLSKGFGFIKFAEYEAQLRAL-GRRHM-IDGRWCDVRIPNGK-DGSSTAHR 684
++ D TG S+GFGF+ F + +A A+ G +DGR V + G HR
Sbjct: 38 KIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHR 96
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 685 KVFVGRCTENITAEDLREYFGSFGQV 762
K+FVG + + E L+E FGSFG++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKI 62
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
+ V GLPW T +E + ++F FG++
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEI 39
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 428 SDLIVLGLPWKTTEEAVRDYFSSFGDL 508
+ + V GLP+ TEEAVR FS +G +
Sbjct: 7 NSVYVGGLPYDITEEAVRRVFSIYGSV 33
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFG 502
L V G+P+++TE+ +R YF S G
Sbjct: 163 LYVGGIPYQSTEDEIRSYFRSCG 185
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 398 AESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDL*WFK*NAIRAPDYPK 553
AES P+ + S + V LP T E + + F SFG + + + I+ YP+
Sbjct: 265 AESIKPQAQGSSIFVANLPMDATIEQLYETFKSFGAI---RKDGIQVRSYPE 313
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 434 LIVLGLPWKTTEEAVRDYFSSFGDL 508
L V LP+ TEE + ++FS+FG +
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKI 287
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +1
Query: 514 VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR-RH---MIDGR 630
V+V R+ +G+S+GF FI F +A + R H ++DGR
Sbjct: 327 VRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEHDGIVLDGR 369
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 508 VMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMID 624
V +V D +G S+GFGFI F E +A A+ + +D
Sbjct: 34 VEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMD 72
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 404 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDL 508
S P RC + GL W T++ +RD F +G L
Sbjct: 2 SEDPEYRC---FIGGLAWTTSDRGLRDAFEKYGHL 33
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 667 SSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
SS+ R VFVG + T E LRE G G V
Sbjct: 4 SSSQRRCVFVGNIPYDATEEQLREICGEVGPV 35
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Frame = +1
Query: 511 MVQVKRDTRTGLSKGFGFIKFAEYE---------AQLRALGRRHMIDGRWCDVRIPNGKD 663
+V+V + TG S+GF F+ + E LGR ++ + D PN +
Sbjct: 113 LVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVN--FADKPKPNKEP 170
Query: 664 GSSTAHRKVFVGRCTENITAEDLREYFGSFGQV 762
K+FVG + +T+E L F G V
Sbjct: 171 LYPETEHKLFVGNLSWTVTSESLAGAFRECGDV 203
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 430 RSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKFAEYE 585
R Y L + D +L + V +V D TG S+GFGF+ ++ +
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 296
>At4g17950.1 68417.m02673 DNA-binding family protein contains Pfam
PF03479: Domain of unknown function (DUF296); contains
Pfam PF02178: AT hook motif;
Length = 439
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Frame = -2
Query: 513 HHKSPKEEK*SRTASSVVFHGKPRTIRS--EHRGRGGGD-----SARGKAHQYR*AGQPS 355
HH P+++ +T S+ F G P ++ + +H R G D RG+ +Y G
Sbjct: 88 HHPQPQQQIDQKTLESLGFDGSPSSVAATQQHSMRFGIDHQQVKKKRGRPRKYAADGGGG 147
Query: 354 AGG 346
GG
Sbjct: 148 GGG 150
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 315 AAYASSTSACHHRRRAGRPTDIGVPSHARNRRRLDHDA 428
A+ +S S H+R RP VP ARN R+ H +
Sbjct: 488 ASSSSVQSRSHNRVSQPRPLASAVPQAARNANRIPHSS 525
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 427 LRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKF---AEYEA 588
L+ + L+ D +L MV+V D TG S+GFGF+ AE EA
Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 352 GGGLAGLPILVCLPTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRD 531
GGG G G + S + R Y L+ D + L + V +V D
Sbjct: 224 GGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYD 283
Query: 532 TRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 630
+G SKGFGF+ + + +A+ + +DGR
Sbjct: 284 RDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGR 318
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 427 LRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRDTRTGLSKGFGFIKF---AEYEA 588
L+ + L+ D +L MV+V D TG S+GFGF+ AE EA
Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 352 GGGLAGLPILVCLPTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFVMVQVKRD 531
GGG G G + S + R Y L+ D + L + V +V D
Sbjct: 232 GGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYD 291
Query: 532 TRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 630
+G SKGFGF+ + + +A+ + +DGR
Sbjct: 292 RDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGR 326
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 428 SDLIVLGLPWKTTEEAVRDYFSSFGDL 508
S L V GL W T + +++ F+SFG++
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEV 61
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 428 SDLIVLGLPWKTTEEAVRDYFSSFGDL 508
S L V GL W T + +++ F+SFG++
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEV 61
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Frame = +1
Query: 529 DTRTGLSKGFGFIKFAEYEAQLRALGR-RHMIDGRW--CDVRIPNGKDGS---------- 669
D +G SKG+GFI F AL + + I R C + G+
Sbjct: 162 DKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFN 221
Query: 670 -STAHRKVFVGRCTENITAEDLREYFGSFGQVQ 765
RK++V + +I + L E+F FG+++
Sbjct: 222 PENVQRKIYVSNVSADIDPQKLLEFFSRFGEIE 254
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 132 EEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGS 242
+E +G+ +SVS+ E EG +DEP++ + GS
Sbjct: 4540 DEFDGKEYSVSEDEEEDKEDEGSEDEPLDNGIGDVGS 4576
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,957,725
Number of Sequences: 28952
Number of extensions: 308405
Number of successful extensions: 1398
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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